the "authorea.com" link and JATS XML in Toobib,

Tue Feb 8 23:15:34 CET 2022

So, a day later I seem to have a passable JATS XML parser and
a prefered handler for the authorea.com domain ( although I 
noticed the handler name is spelled oddly ... ). Toobib
found 6 strategies for getting the info although some
are a bit redundant but produced varied results depending 
on details such as html quality. Once fully integrated,
the JATS XML handler should be able to scan most html
for links that look like similar information and
use that as a source for bibtex entries. In this case, the 
xml link was just text processing on the original link
although that may not always work it can be added 
as a strategy- right now I may mutate things like "pdf" to
"abs" for example and that could now include "xml."
A sufficiently large collection of hacks is not distinguishable
from AI :) I also got a chance to read the article and
it may be worth all the effort to cite it :) 
I'm ending up with a header library of handlers most of which
can also be compiled standalone for testing.  I'll get
back to the character set and encoding stuff as it comes up
but the basics seem functional now. Thanks. 

% mjmhandler: toobib guessaurhoterea
% date 2022-02-08:16:46:33 Tue Feb 8 16:46:33 EST 2022
% srcurl: https://www.authorea.com/doi/full/10.22541/au.159103680.00306295
% citeurl: https://www.authorea.com/doi/xml/10.22541/au.159103680.00306295
@article{2020_Silva_Nathalia_Brando_Felipe_Nassar,
X_TooBib = {urldate: FixBeKvp s= cmd=date "+%Y-%m-%d" d=2022-02-08 dn=urldate},
X_TooBib = {author: Nathalia , Silva and Felipe , Brandão and Figueiredo , Nassar Alessandra and Simone , Miyashiro and Nathalie , Cunha and Del , Fava Claudia and Felipe , Balaro M�rio and Fernanda , Gon�alves and Seabra , Leal Felipe and Isabel , Cosentino and Júlia , Vignoli},
abstract = {This study aimed to describe an outbreak of abomasal bloat in kid goats and its clinical, pathological, microbiological, molecular, and epidemiological characteristics. In the kidding season, increased mortality of kid goats with a history of abdominal bloating, dullness, and death was reported. Clinical examinations were carried out, and biological samples from necropsied kids (n = 11) were collected for pathological, microbiological, and molecular diagnosis. Likewise, an epidemiological survey was carried out in order to verify possible associated factors related to the disorder. A therapeutic protocol was also implemented. The main necropsy findings were dehydration, pale mucosa, ascites, abomasal and intestinal meteorism and congestion, emphysematous abomasitis, and cranial areas of lung consolidation. Through staining techniques for cytological evaluations of the abomasum, it was possible to identify Gram positive bacteria, coccoid, with a cuboid shape suggestive of Clostridium ventriculi, Gram positive bacilli suggestive of Clostridium perfringens and ovoid basophilic yeasts compatible with Saccharomyces cerevisiae. By anaerobic culture and molecular tests, C. ventriculi and C. perfringens type A were confirmed. The main histopathological findings were cholangiohepatitis, nephrosis, emphysematous abomasitis, hyalinization of the gastric and intestinal walls, gastroenteritis, intestinal thromboembolism, pulmonary edema, and non-purulent pneumonia, overall suggesting a systemic enterotoxemia picture. The early detection of sick kids and quick initiation of treatment were the primary determinants of the prognosis of each case. There was a final mortality rate of 24.4% (20/82), and the agents C. perfringens type A and C. ventriculi were identified as the main ones involved, with the possible participation of S. cerevisiae. Among the possible associated factors, the erroneous use of the milk replacer associated with inadequate kid management was verified. Among the prophylactic measures, hygiene care, proper use of milk replacer, vaccination plan containing C. perfringens alpha toxoid associated with a good colostrum management were suggested.},
abstract-type = {abstract},
author = {Nathalia , Silva and Felipe , Brandão and Figueiredo , Nassar Alessandra and Simone , Miyashiro and Nathalie , Cunha and Del , Fava Claudia and Felipe , Balaro M�rio and Fernanda , Gon�alves and Seabra , Leal Felipe and Isabel , Cosentino and Júlia , Vignoli},
author_orig = {Silva Nathalia and Brandão Felipe and Nassar Alessandra Figueiredo and Miyashiro Simone and Cunha Nathalie and Fava Claudia Del and Balaro M�rio Felipe and Gon�alves Fernanda and Leal Felipe Seabra and Cosentino Isabel and Vignoli Júlia},
date-type = {preprint},
day = {1},
doi = {10.22541/au.159103680.00306295},
journal = {authorea},
kwd = {bacterial pathogens, diagnostics, disease control, therapeutic},
kwd-group-type = {author-created},
month = {6},
pub-id-type = {doi},
publication-format = {electronic},
publisher = {Authorea},
self-uri = {This preprint is available at https://doi.org/10.22541/au.159103680.00306295},
text = {10.22541/au.159103680.00306295},
title = {Outbreak of abomasal bloat in goat kids due to Clostridium ventriculi and Clostridium perfringens type A in Brazil},
urldate = {2022-02-08},
xlink:href = {https://doi.org/10.22541/au.159103680.00306295},
year = {2020},
url={https://www.authorea.com/doi/full/10.22541/au.159103680.00306295},
srcurl={https://www.authorea.com/doi/full/10.22541/au.159103680.00306295},
xsrcurl={https://www.authorea.com/doi/full/10.22541/au.159103680.00306295},
citeurl={https://www.authorea.com/doi/xml/10.22541/au.159103680.00306295}

}

% mjmhandler: toobib handledoilink
% date 2022-02-08:16:46:35 Tue Feb 8 16:46:35 EST 2022
% srcurl: https://www.authorea.com/doi/full/10.22541/au.159103680.00306295
% citeurl: http://api.crossref.org/works/10.22541/au.159103680.00306295
@article{2020_rio_Felipe_Balaro_Fernanda_Gon_alves,
X_TooBib = {year: ReWriteKvp dn=year sn=date flags=4},
X_TooBib = {month: ReWriteKvp dn=month sn=date flags=7},
X_TooBib = {day: ReWriteKvp dn=day sn=date flags=7},
X_TooBib = {journal: ReWriteParse be.get(s)=Authorea, Inc. be.get(dest)=},
X_TooBib = {urldate: FixBeKvp s= cmd=date "+%Y-%m-%d" d=2022-02-08 dn=urldate},
X_TooBib = {author: FeliperioBalaro , M and Gonalves , Fernanda and Leal , Felipe Seabra and Cosentino , Isabel and liaVignoli , J and Silva , Nathalia and Felipe Brand and Nassar , Alessandra Figueiredo and Miyashiro , Simone and Cunha , Nathalie and DelFava , Claudia},
affiliation = {Universidade Federal Fluminense and Universidade Federal Fluminense and Universidade Federal Fluminense and Universidade Federal Fluminense and Universidade Federal Fluminense and Universidade Federal Fluminense and Universidade Federal Fluminense and Instituto Biologico and Instituto Biologico and Universidade Federal Fluminense and Instituto Biologico},
author = {FeliperioBalaro , M and Gonalves , Fernanda and Leal , Felipe Seabra and Cosentino , Isabel and liaVignoli , J and Silva , Nathalia and Felipe Brand and Nassar , Alessandra Figueiredo and Miyashiro , Simone and Cunha , Nathalie and DelFava , Claudia},
author_orig = {M rio Felipe Balaro and Fernanda Gon alves and Felipe Seabra Leal and Isabel Cosentino and J lia Vignoli and Nathalia Silva and Felipe Brand o and Alessandra Figueiredo Nassar and Simone Miyashiro and Nathalie Cunha and Claudia Del Fava},
bib-source = {Crossref},
content-domain = {false},
date = {2020-06-01},
date-accepted = {2020-06-01},
date-created = {2020-06-01T18:40:05Z},
date-deposited = {2020-06-012020-06-01T18:40:05Z},
date-indexed = {2021-12-17T19:18:05Z},
date-issued = {2020-06-01},
date-posted = {2020-06-01},
day = {01},
deposited = {1591036805000},
doi = {10.22541/au.159103680.00306295},
group-title = {Preprints},
institution = {Authorea, Inc.},
is-referenced-by-count = {0},
journal = {Authorea, Inc.},
member = {9829},
month = {06},
prefix = {10.22541},
publisher = {Authorea, Inc.},
reference-count = {0},
references-count = {0},
score = {1},
subtype = {preprint},
title = {Outbreak of abomasal bloat in goat kids due to Clostridium ventriculi and Clostridium perfringens type A in Brazil},
type = {posted-content},
url = {http://dx.doi.org/10.22541/au.159103680.00306295},
urldate = {2022-02-08},
year = {2020},
srcurl={https://www.authorea.com/doi/full/10.22541/au.159103680.00306295},
xsrcurl={https://www.authorea.com/doi/full/10.22541/au.159103680.00306295},
citeurl={http://api.crossref.org/works/10.22541/au.159103680.00306295}

}

% mjmhandler: toobib handlemutate<-guessaurhoterea
% date 2022-02-08:16:46:36 Tue Feb 8 16:46:36 EST 2022
% srcurl: https://www.authorea.com/doi/abs/10.22541/au.159103680.00306295 https://www.authorea.com/doi/full/10.22541/au.159103680.00306295
% citeurl: https://www.authorea.com/doi/xml/10.22541/au.159103680.00306295
@article{2020_Balaro_Mrio_Felipe_Gonalves_Fernanda,
X_TooBib = {urldate: FixBeKvp s= cmd=date "+%Y-%m-%d" d=2022-02-08 dn=urldate},
X_TooBib = {author: Felipe , Balaro MÃ¡rio and Fernanda , GonÃ§alves and Seabra , Leal Felipe and Isabel , Cosentino and JÃ�lia , Vignoli and Nathalia , Silva and Felipe , BrandÃ£o and Figueiredo , Nassar Alessandra and Simone , Miyashiro and Nathalie , Cunha and Del , Fava Claudia},
abstract = {This study aimed to describe an outbreak of abomasal bloat in kid goats and its clinical, pathological, microbiological, molecular, and epidemiological characteristics. In the kidding season, increased mortality of kid goats with a history of abdominal bloating, dullness, and death was reported. Clinical examinations were carried out, and biological samples from necropsied kids (n = 11) were collected for pathological, microbiological, and molecular diagnosis. Likewise, an epidemiological survey was carried out in order to verify possible associated factors related to the disorder. A therapeutic protocol was also implemented. The main necropsy findings were dehydration, pale mucosa, ascites, abomasal and intestinal meteorism and congestion, emphysematous abomasitis, and cranial areas of lung consolidation. Through staining techniques for cytological evaluations of the abomasum, it was possible to identify Gram positive bacteria, coccoid, with a cuboid shape suggestive of Clostridium ventriculi, Gram positive bacilli suggestive of Clostridium perfringens and ovoid basophilic yeasts compatible with Saccharomyces cerevisiae. By anaerobic culture and molecular tests, C. ventriculi and C. perfringens type A were confirmed. The main histopathological findings were cholangiohepatitis, nephrosis, emphysematous abomasitis, hyalinization of the gastric and intestinal walls, gastroenteritis, intestinal thromboembolism, pulmonary edema, and non-purulent pneumonia, overall suggesting a systemic enterotoxemia picture. The early detection of sick kids and quick initiation of treatment were the primary determinants of the prognosis of each case. There was a final mortality rate of 24.4% (20/82), and the agents C. perfringens type A and C. ventriculi were identified as the main ones involved, with the possible participation of S. cerevisiae. Among the possible associated factors, the erroneous use of the milk replacer associated with inadequate kid management was verified. Among the prophylactic measures, hygiene care, proper use of milk replacer, vaccination plan containing C. perfringens alpha toxoid associated with a good colostrum management were suggested.},
abstract-type = {abstract},
author = {Felipe , Balaro MÃ¡rio and Fernanda , GonÃ§alves and Seabra , Leal Felipe and Isabel , Cosentino and JÃ�lia , Vignoli and Nathalia , Silva and Felipe , BrandÃ£o and Figueiredo , Nassar Alessandra and Simone , Miyashiro and Nathalie , Cunha and Del , Fava Claudia},
author_orig = {Balaro MÃ¡rio Felipe and GonÃ§alves Fernanda and Leal Felipe Seabra and Cosentino Isabel and Vignoli JÃ�lia and Silva Nathalia and BrandÃ£o Felipe and Nassar Alessandra Figueiredo and Miyashiro Simone and Cunha Nathalie and Fava Claudia Del},
date-type = {preprint},
day = {1},
doi = {10.22541/au.159103680.00306295},
journal = {authorea},
kwd = {bacterial pathogens, diagnostics, disease control, therapeutic},
kwd-group-type = {author-created},
month = {6},
pub-id-type = {doi},
publication-format = {electronic},
publisher = {Authorea},
self-uri = {This preprint is available at https://doi.org/10.22541/au.159103680.00306295},
text = {10.22541/au.159103680.00306295},
title = {Outbreak of abomasal bloat in goat kids due to Clostridium ventriculi and Clostridium perfringens type A in Brazil},
urldate = {2022-02-08},
xlink:href = {https://doi.org/10.22541/au.159103680.00306295},
year = {2020},
url={https://www.authorea.com/doi/full/10.22541/au.159103680.00306295},
srcurl={https://www.authorea.com/doi/full/10.22541/au.159103680.00306295},
xsrcurl={https://www.authorea.com/doi/abs/10.22541/au.159103680.00306295},
citeurl={https://www.authorea.com/doi/xml/10.22541/au.159103680.00306295}

}

% mjmhandler: toobib handlemutate<-handledoilink
% date 2022-02-08:16:46:39 Tue Feb 8 16:46:39 EST 2022
% srcurl: https://www.authorea.com/doi/abs/10.22541/au.159103680.00306295 https://www.authorea.com/doi/full/10.22541/au.159103680.00306295
% citeurl: http://api.crossref.org/works/10.22541/au.159103680.00306295
@article{2020_rio_Felipe_Balaro_Fernanda_Gon_alves,
X_TooBib = {year: ReWriteKvp dn=year sn=date flags=4},
X_TooBib = {month: ReWriteKvp dn=month sn=date flags=7},
X_TooBib = {day: ReWriteKvp dn=day sn=date flags=7},
X_TooBib = {journal: ReWriteParse be.get(s)=Authorea, Inc. be.get(dest)=},
X_TooBib = {urldate: FixBeKvp s= cmd=date "+%Y-%m-%d" d=2022-02-08 dn=urldate},
X_TooBib = {author: FeliperioBalaro , M and Gonalves , Fernanda and Leal , Felipe Seabra and Cosentino , Isabel and liaVignoli , J and Silva , Nathalia and Felipe Brand and Nassar , Alessandra Figueiredo and Miyashiro , Simone and Cunha , Nathalie and DelFava , Claudia},
affiliation = {Universidade Federal Fluminense and Universidade Federal Fluminense and Universidade Federal Fluminense and Universidade Federal Fluminense and Universidade Federal Fluminense and Universidade Federal Fluminense and Universidade Federal Fluminense and Instituto Biologico and Instituto Biologico and Universidade Federal Fluminense and Instituto Biologico},
author = {FeliperioBalaro , M and Gonalves , Fernanda and Leal , Felipe Seabra and Cosentino , Isabel and liaVignoli , J and Silva , Nathalia and Felipe Brand and Nassar , Alessandra Figueiredo and Miyashiro , Simone and Cunha , Nathalie and DelFava , Claudia},
author_orig = {M rio Felipe Balaro and Fernanda Gon alves and Felipe Seabra Leal and Isabel Cosentino and J lia Vignoli and Nathalia Silva and Felipe Brand o and Alessandra Figueiredo Nassar and Simone Miyashiro and Nathalie Cunha and Claudia Del Fava},
bib-source = {Crossref},
content-domain = {false},
date = {2020-06-01},
date-accepted = {2020-06-01},
date-created = {2020-06-01T18:40:05Z},
date-deposited = {2020-06-012020-06-01T18:40:05Z},
date-indexed = {2021-12-17T19:18:05Z},
date-issued = {2020-06-01},
date-posted = {2020-06-01},
day = {01},
deposited = {1591036805000},
doi = {10.22541/au.159103680.00306295},
group-title = {Preprints},
institution = {Authorea, Inc.},
is-referenced-by-count = {0},
journal = {Authorea, Inc.},
member = {9829},
month = {06},
prefix = {10.22541},
publisher = {Authorea, Inc.},
reference-count = {0},
references-count = {0},
score = {1},
subtype = {preprint},
title = {Outbreak of abomasal bloat in goat kids due to Clostridium ventriculi and Clostridium perfringens type A in Brazil},
type = {posted-content},
url = {http://dx.doi.org/10.22541/au.159103680.00306295},
urldate = {2022-02-08},
year = {2020},
srcurl={https://www.authorea.com/doi/full/10.22541/au.159103680.00306295},
xsrcurl={https://www.authorea.com/doi/abs/10.22541/au.159103680.00306295},
citeurl={http://api.crossref.org/works/10.22541/au.159103680.00306295}

}

% mjmhandler: toobib handleadhochtml<-all
% date 2022-02-08:16:47:05 Tue Feb 8 16:47:05 EST 2022
% srcurl: https://www.authorea.com/doi/full/10.22541/au.159103680.00306295
% citeurl: https://www.authorea.com/doi/full/10.22541/au.159103680.00306295
@article{Outbreakabomasalbloat,
X_TooBib = {date: FixBeKvp s=2020/06/01 cmd=date -f -  "+%Y-%m-%d" d=2020-06-01 dn=date},
X_TooBib = {year: ReWriteKvp dn=year sn=date flags=4},
X_TooBib = {month: ReWriteKvp dn=month sn=date flags=7},
X_TooBib = {day: ReWriteKvp dn=day sn=date flags=7},
X_TooBib = {author: ReWriteParse be.get("author")=},
X_TooBib = {author: ReWriteParse be.get("author")=},
X_TooBib = {publisher: ReWriteParse be.get(s)= be.get(dest)=},
X_TooBib = {journal: ReWriteParse be.get(s)= be.get(dest)=},
X_TooBib = {urldate: FixBeKvp s= cmd=date "+%Y-%m-%d" d=2022-02-08 dn=urldate},
X_TooBib = {author: Clostridiumtoduekidsgoatinbloatabomasalofventriculi , Outbreak and inAtypeBrazil , Clostridium perfringens},
abstract = {This study aimed to describe an outbreak of abomasal bloat in kid goats and its clinical, pathological, microbiological, molecular, and epidemiological characteristics. In the kidding season, increased mortality of kid goats with a history of abdomina},
article:modified_time = {2020-05-31 12:14:57 UTC},
article:publisher = {https://www.authorea.com},
author = {Clostridiumtoduekidsgoatinbloatabomasalofventriculi , Outbreak and inAtypeBrazil , Clostridium perfringens},
author_orig = {Outbreak of abomasal bloat in goat kids due to Clostridium ventriculi and Clostridium perfringens type A in Brazil},
citation_abstract = {This study aimed to describe an outbreak of abomasal bloat in kid goats and its clinical, pathological, microbiological, molecular, and epidemiological characteristics. In the kidding season, increased mortality of kid goats with a history of abdominal bloating, dullness, and death was reported. Clinical examinations were carried out, and biological samples from necropsied kids (n = 11) were collected for pathological, microbiological, and molecular diagnosis. Likewise, an epidemiological survey was carried out in order to verify possible associated factors related to the disorder. A therapeutic protocol was also implemented. The main necropsy findings were dehydration, pale mucosa, ascites, abomasal and intestinal meteorism and congestion, emphysematous abomasitis, and cranial areas of lung consolidation. Through staining techniques for cytological evaluations of the abomasum, it was possible to identify Gram positive bacteria, coccoid, with a cuboid shape suggestive of Clostridium ventriculi, Gram positive bacilli suggestive of Clostridium perfringens and ovoid basophilic yeasts compatible with Saccharomyces cerevisiae. By anaerobic culture and molecular tests, C. ventriculi and C. perfringens type A were confirmed. The main histopathological findings were cholangiohepatitis, nephrosis, emphysematous abomasitis, hyalinization of the gastric and intestinal walls, gastroenteritis, intestinal thromboembolism, pulmonary edema, and non-purulent pneumonia, overall suggesting a systemic enterotoxemia picture. The early detection of sick kids and quick initiation of treatment were the primary determinants of the prognosis of each case. There was a final mortality rate of 24.4% (20/82), and the agents C. perfringens type A and C. ventriculi were identified as the main ones involved, with the possible participation of S. cerevisiae. Among the possible associated factors, the erroneous use of the milk replacer associated with inadequate kid management was verified. Among the prophylactic measures, hygiene care, proper use of milk replacer, vaccination plan containing C. perfringens alpha toxoid associated with a good colostrum management were suggested.},
citation_author = {Mário Felipe Balaro and Fernanda Gonçalves and Felipe Seabra Leal and Isabel Cosentino and Júlia Vignoli and Nathalia Silva and Felipe Brandão and Alessandra Figueiredo Nassar and Simone Miyashiro and Nathalie Cunha and Claudia Del Fava},
citation_doi = {10.22541/au.159103680.00306295},
citation_journal_title = {Authorea Preprints},
citation_pdf_url = {https://www.authorea.com/doi/pdf/10.22541/au.159103680.00306295},
citation_publication_date = {2020/06/01},
citation_publisher = {Authorea},
citation_title = {Outbreak of abomasal bloat in goat kids due to Clostridium ventriculi and Clostridium perfringens type A in Brazil},
csrf-param = {authenticity_token},
csrf-token = {XWUQZBPDMo5oImBYudedjrii1og_aKkCm-RSZ0JlXkk-Z2FCNzBF9tsGZuLcr8MbA8ZcNxSlpUPqy6FeyXS2mA},
date = {2020-06-01},
day = {01},
description = {This study aimed to describe an outbreak of abomasal bloat in kid goats and its clinical, pathological, microbiological, molecular, and epidemiological characteristics. In the kidding season, increased mortality of kid goats with a history of abdomina},
image = {https://authorea.com/users/328017/articles/455417-outbreak-of-abomasal-bloat-in-goat-kids-due-to-clostridium-ventriculi-and-clostridium-perfringens-type-a-in-brazil/master/file/figures/Figure 1/Figure 1.png?1590927297},
month = {06},
name = {Outbreak of abomasal bloat in goat kids due to Clostridium ventriculi and Clostridium perfringens type A in Brazil},
og:description = {This study aimed to describe an outbreak of abomasal bloat in kid goats and its clinical, pathological, microbiological, molecular, and epidemiological characteristics. In the kidding season, increased mortality of kid goats with a history of abdomina},
og:image = {https://authorea.com/users/328017/articles/455417-outbreak-of-abomasal-bloat-in-goat-kids-due-to-clostridium-ventriculi-and-clostridium-perfringens-type-a-in-brazil/master/file/figures/Figure 1/Figure 1.png?1590927297},
og:site_name = {Authorea},
og:title = {Outbreak of abomasal bloat in goat kids due to Clostridium ventriculi and Clostridium perfringens type A in Brazil},
og:type = {article},
og:url = {https://www.authorea.com/doi/full/10.22541/au.159103680.00306295?commit=524fa00aa17340bad1a2a15e587934ff3bdec05a},
pagetitle = {Outbreak of abomasal bloat in goat kids due to Clostridium ventriculi and Clostridium perfringens type A in Brazil - Authorea},
title = {Outbreak of abomasal bloat in goat kids due to Clostridium ventriculi and Clostridium perfringens type A in Brazil - Authorea},
twitter:card = {summary_large_image},
twitter:description = {This study aimed to describe an outbreak of abomasal bloat in kid goats and its clinical, pathological, microbiological, molecular, and epidemiological characteristics. In the kidding season, increased mortality of kid goats with a history of abdomina},
twitter:image:src = {https://authorea.com/users/328017/articles/455417-outbreak-of-abomasal-bloat-in-goat-kids-due-to-clostridium-ventriculi-and-clostridium-perfringens-type-a-in-brazil/master/file/figures/Figure 1/Figure 1.png?1590927297},
twitter:site = {@authorea},
twitter:title = {Outbreak of abomasal bloat in goat kids due to Clostridium ventriculi and Clostridium perfringens type A in Brazil},
urldate = {2022-02-08},
x_toobib_mutatemissing = {ds=abstract (*ii).second=This study aimed to describe an outbreak of abomasal bloat in kid goats and its clinical, pathological, microbiological, molecular, and epidemiological characteristics. In the kidding season, increased mortality of kid goats with a history of abdomina ss=description},
year = {2020},
url={https://www.authorea.com/doi/full/10.22541/au.159103680.00306295},
srcurl={https://www.authorea.com/doi/full/10.22541/au.159103680.00306295},
xsrcurl={https://www.authorea.com/doi/full/10.22541/au.159103680.00306295},
citeurl={https://www.authorea.com/doi/full/10.22541/au.159103680.00306295}

}

% mjmhandler: toobib handlegsmeta(scraper)
% date 2022-02-08:16:47:05 Tue Feb 8 16:47:05 EST 2022
% srcurl: https://www.authorea.com/doi/full/10.22541/au.159103680.00306295
% citeurl: https://www.authorea.com/doi/full/10.22541/au.159103680.00306295
@article{OutbreakabomasalbloatMrioFelipeBalaro2020,
X_TooBib = {author: ReWriteParse be.get("author")=},
X_TooBib = {urldate: FixBeKvp s= cmd=date "+%Y-%m-%d" d=2022-02-08 dn=urldate},
X_TooBib = {author: Balaro , Mário  Felipe and Gonçalves  , Fernanda and Leal , Felipe Seabra and Cosentino , Isabel and Vignoli , J�lia and Silva , Nathalia and Brandão  , Felipe and Nassar , Alessandra Figueiredo and Miyashiro , Simone and Cunha , Nathalie and DelFava , Claudia},
abstract = {This study aimed to describe an outbreak of abomasal bloat in kid goats and its clinical, pathological, microbiological, molecular, and epidemiological characteristics. In the kidding season, increased mortality of kid goats with a history of abdominal bloating, dullness, and death was reported. Clinical examinations were carried out, and biological samples from necropsied kids (n = 11) were collected for pathological, microbiological, and molecular diagnosis. Likewise, an epidemiological survey was carried out in order to verify possible associated factors related to the disorder. A therapeutic protocol was also implemented. The main necropsy findings were dehydration, pale mucosa, ascites, abomasal and intestinal meteorism and congestion, emphysematous abomasitis, and cranial areas of lung consolidation. Through staining techniques for cytological evaluations of the abomasum, it was possible to identify Gram positive bacteria, coccoid, with a cuboid shape suggestive of Clostridium ventriculi, Gram positive bacilli suggestive of Clostridium perfringens and ovoid basophilic yeasts compatible with Saccharomyces cerevisiae. By anaerobic culture and molecular tests, C. ventriculi and C. perfringens type A were confirmed. The main histopathological findings were cholangiohepatitis, nephrosis, emphysematous abomasitis, hyalinization of the gastric and intestinal walls, gastroenteritis, intestinal thromboembolism, pulmonary edema, and non-purulent pneumonia, overall suggesting a systemic enterotoxemia picture. The early detection of sick kids and quick initiation of treatment were the primary determinants of the prognosis of each case. There was a final mortality rate of 24.4% (20/82), and the agents C. perfringens type A and C. ventriculi were identified as the main ones involved, with the possible participation of S. cerevisiae. Among the possible associated factors, the erroneous use of the milk replacer associated with inadequate kid management was verified. Among the prophylactic measures, hygiene care, proper use of milk replacer, vaccination plan containing C. perfringens alpha toxoid associated with a good colostrum management were suggested.},
author = {Balaro , Mário  Felipe and Gonçalves  , Fernanda and Leal , Felipe Seabra and Cosentino , Isabel and Vignoli , J�lia and Silva , Nathalia and Brandão  , Felipe and Nassar , Alessandra Figueiredo and Miyashiro , Simone and Cunha , Nathalie and DelFava , Claudia},
author_orig = {Mário Felipe Balaro and Fernanda Gonçalves and Felipe Seabra Leal and Isabel Cosentino and J�lia Vignoli and Nathalia Silva and Felipe Brandão and Alessandra Figueiredo Nassar and Simone Miyashiro and Nathalie Cunha and Claudia Del Fava},
authors = {Mário Felipe Balaro and Fernanda Gonçalves and Felipe Seabra Leal and Isabel Cosentino and J�lia Vignoli and Nathalia Silva and Felipe Brandão and Alessandra Figueiredo Nassar and Simone Miyashiro and Nathalie Cunha and Claudia Del Fava},
date = {2020/06/01},
day = {01},
doi = {10.22541/au.159103680.00306295},
firstpage = {},
journal = {Authorea Preprints},
lastpage = {},
month = {06},
pdf_url = {https://www.authorea.com/doi/pdf/10.22541/au.159103680.00306295},
publisher = {Authorea},
title = {Outbreak of abomasal bloat in goat kids due to Clostridium ventriculi and Clostridium perfringens type A in Brazil},
urldate = {2022-02-08},
year = {2020},
url={https://www.authorea.com/doi/full/10.22541/au.159103680.00306295},
srcurl={https://www.authorea.com/doi/full/10.22541/au.159103680.00306295},
xsrcurl={https://www.authorea.com/doi/full/10.22541/au.159103680.00306295},
citeurl={https://www.authorea.com/doi/full/10.22541/au.159103680.00306295}

}

-- 

mike marchywka
306 charles cox
canton GA 30115
USA, Earth 
marchywka at hotmail.com
404-788-1216
ORCID: 0000-0001-9237-455X