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<div>I tried <font face="Courier New">tlmgr update --all</font><font face="Courier New"> </font>and it wanted to do some 749 updates. It skipped afm2pl after the first run, so I did: <font face="Courier New">while true; do tlmgr update --all; sleep 2; don</font><font face="Courier New">e</font></div>
<div> </div>
<div>That accumulated the following list of skipped (due to checksum mismatch) packages:</div>
<div> </div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: afm2pl</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: aleph</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: animate</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: auto-pst-pdf</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: biblatex-apa</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: bibtex8</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: bibtexu</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: bxcalc</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: cjkutils</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: ctex</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: dtl</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: dvi2tty</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: dviasm</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: dviljk</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: dviout-util</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: dvipng</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: dvipos</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: dynkin-diagrams</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: fontools</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: geometry</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: gloss-occitan</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: gsftopk</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: jadetex</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: l3backend</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: l3build</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: latex-base-dev</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: libertine</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: lualatex-math</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: luatexbase</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: m-tx</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: make4ht</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: makeindex</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: mathpazo</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: metafont</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: mflua</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: moderncv</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: omegaware</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: pdftex</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: pgfgantt</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: pgfplots</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: ps2pk</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: psnfss</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: pstools</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: ptex</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: seetexk</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: synctex</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: t1utils</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: tetex</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: tetex.x86_64-linux</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: tex</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: tex4ht</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: texlive-scripts</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: texworks</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: todonotes</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: ttfutils</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: uptex</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: velthuis</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: vlna</font></div>
<div><font face="Courier New">tlmgr: skipping forcibly removed package: xdvi</font></div>
<div> </div>
<div>It got stuck before finishing the whole list of 749, because the auto-install packages with the same issue was “non skippable”:</div>
<div> </div>
<div><font face="Courier New">[ 1/68, ??:??/??:??] auto-install: biblatex-apa6 (52949) [173k] ... TLPDB::_install_package: downloading did not succeed (download_file failed)</font></div>
<div><font face="Courier New">tlmgr: couldn't install new package biblatex-apa6</font></div>
<div><font face="Courier New">[ 2/68, 00:00/00:00] auto-install: pdftosrc (52940) [24k] ... TLPDB::_install_package: downloading did not succeed (download_file failed)</font></div>
<div><font face="Courier New">tlmgr: couldn't install new package pdftosrc</font></div>
<div><font face="Courier New">TLUtils::check_file: checksums differ for /tmp/TSBkq_bPBY/LAnafubHCQ/pinoutikz.tar.xz:</font></div>
<div><font face="Courier New">TLUtils::check_file: tlchecksum=af226e7f74a24f9f8517070d20a3bd8218c3a80e91384b2a436f79167e21f5fd96366d69beb116167919f1392bc9c274285caacfef32a90e6bef7afe9079f7a1, arg=7663a2f4bd2bfeda75cfbe8dc59b268345d67061886da6b3f5157bbc6cd336afc8b2cc463d51497544a757235b18fffb642b9fd60f9cff525617a409fda6fe76</font></div>
<div><font face="Courier New">Use of uninitialized value $check_file_tmpdir in concatenation (.) or string at /path/texlive/2019/tlpkg/TeXLive/TLUtils.pm line 2187.</font></div>
<div><font face="Courier New">TLUtils::check_file: removing /tmp/TSBkq_bPBY/LAnafubHCQ/pinoutikz.tar.xz, but saving copy in </font></div>
<div><font face="Courier New">Use of uninitialized value $destdir in concatenation (.) or string at /path/texlive/2019/tlpkg/TeXLive/TLUtils.pm line 1167.</font></div>
<div><font face="Courier New">Use of uninitialized value $destdir in -d at /path/texlive/2019/tlpkg/TeXLive/TLUtils.pm line 1170.</font></div>
<div><font face="Courier New">Use of uninitialized value $tree in string at /path/texlive/2019/tlpkg/TeXLive/TLUtils.pm line 889.</font></div>
<div><font face="Courier New">Use of uninitialized value $tree in split at /path/texlive/2019/tlpkg/TeXLive/TLUtils.pm line 897.</font></div>
<div><font face="Courier New">open(>/pinoutikz.tar.xz) failed: Permission denied at /path/texlive/2019/tlpkg/TeXLive/TLUtils.pm line 1204.</font></div>
<div> </div>
<div>I believe this to be a checksuming issue with dereferencing the symlinks. I’m currently doing a new download of CTAN with rsync which will hopefully preserve the symlinks. That copy of the mirror might work better.</div>
<div> </div>
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