texlive[42366] trunk: latexindent (27oct16)

commits+karl at tug.org commits+karl at tug.org
Thu Oct 27 23:23:00 CEST 2016


Revision: 42366
          http://tug.org/svn/texlive?view=revision&revision=42366
Author:   karl
Date:     2016-10-27 23:22:59 +0200 (Thu, 27 Oct 2016)
Log Message:
-----------
latexindent (27oct16)

Modified Paths:
--------------
    trunk/Build/source/texk/texlive/linked_scripts/latexindent/latexindent.pl
    trunk/Master/bin/win32/latexindent.exe
    trunk/Master/texmf-dist/doc/support/latexindent/success/alignmentoutsideEnvironments.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/braceTest.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/environments.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/matrix.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/nestedalignment.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/nestedalignment1.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/outputfile.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/sampleAFTER.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/sampleBEFORE.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/stylefile.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/testItems.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/testcls.cls
    trunk/Master/texmf-dist/doc/support/latexindent/success/theorem.tex
    trunk/Master/texmf-dist/scripts/latexindent/defaultSettings.yaml
    trunk/Master/texmf-dist/scripts/latexindent/latexindent.pl

Added Paths:
-----------
    trunk/Master/texmf-dist/doc/support/latexindent/documentation/latexindent.pdf
    trunk/Master/texmf-dist/doc/support/latexindent/documentation/latexindent.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/bracketTest.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/filecontents1.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/filecontents2.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/ifelsefiSmall.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/items1.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/items2.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/items3.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/items4.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/table4.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/table5.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/testHeadings-simple.tex
    trunk/Master/texmf-dist/doc/support/latexindent/success/verbatim1.tex

Removed Paths:
-------------
    trunk/Master/texmf-dist/doc/support/latexindent/documentation/manual.pdf
    trunk/Master/texmf-dist/doc/support/latexindent/documentation/manual.tex

Modified: trunk/Build/source/texk/texlive/linked_scripts/latexindent/latexindent.pl
===================================================================
(Binary files differ)

Modified: trunk/Master/bin/win32/latexindent.exe
===================================================================
(Binary files differ)

Added: trunk/Master/texmf-dist/doc/support/latexindent/documentation/latexindent.pdf
===================================================================
(Binary files differ)

Index: trunk/Master/texmf-dist/doc/support/latexindent/documentation/latexindent.pdf
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/documentation/latexindent.pdf	2016-10-27 01:16:43 UTC (rev 42365)
+++ trunk/Master/texmf-dist/doc/support/latexindent/documentation/latexindent.pdf	2016-10-27 21:22:59 UTC (rev 42366)

Property changes on: trunk/Master/texmf-dist/doc/support/latexindent/documentation/latexindent.pdf
___________________________________________________________________
Added: svn:mime-type
## -0,0 +1 ##
+application/pdf
\ No newline at end of property
Added: trunk/Master/texmf-dist/doc/support/latexindent/documentation/latexindent.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/documentation/latexindent.tex	                        (rev 0)
+++ trunk/Master/texmf-dist/doc/support/latexindent/documentation/latexindent.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -0,0 +1,1512 @@
+% arara: pdflatex
+% arara: bibtex
+% arara: pdflatex
+% arara: pdflatex
+% !arara: pdflatex
+% !arara: indent: {overwrite: yes, trace: yes, localSettings: yes, silent: yes}
+\documentclass[11pt]{article}
+%   This program is free software: you can redistribute it and/or modify
+%   it under the terms of the GNU General Public License as published by
+%   the Free Software Foundation, either version 3 of the License, or
+%   (at your option) any later version.
+%
+%   This program is distributed in the hope that it will be useful,
+%   but WITHOUT ANY WARRANTY; without even the implied warranty of
+%   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+%   GNU General Public License for more details.
+%
+%   See <http://www.gnu.org/licenses/>.
+\usepackage[left=4.5cm,right=2.5cm,showframe=false,
+top=2cm,bottom=1.5cm]{geometry}                      % page setup
+\usepackage{parskip}                                 % paragraph skips
+\usepackage{booktabs}                                % beautiful tables
+\usepackage{listings}                                % nice verbatim environments
+\usepackage{titlesec}                                % customize headings
+\usepackage{changepage}                              % adjust width of page
+\usepackage{fancyhdr}                                % headers & footers
+\usepackage[sc,format=hang,font=small]{caption}      % captions
+\usepackage[backend=bibtex]{biblatex}                % bibliography
+\usepackage{tcolorbox}                                % framed environments
+\usepackage[charter]{mathdesign}                     % changes font
+\usepackage[expansion=false,kerning=true]{microtype} % better kerning
+\usepackage{enumitem}                                % custom lists
+% setup gitinfo2, as in the manual, details just above begin{document}
+\usepackage[mark,grumpy]{gitinfo2}
+\usepackage{examplep}
+% tcolorbox libraries
+\tcbuselibrary{breakable,skins,listings}
+% tikz libraries
+\usetikzlibrary{positioning}
+\usetikzlibrary{decorations.pathmorphing}
+\usetikzlibrary{decorations,shapes}
+\usepackage{varioref}                                % clever referencing
+\usepackage{hyperref}
+\hypersetup{
+   pdfauthor={Chris Hughes},
+   pdftitle={latexindent.pl package},
+   pdfkeywords={perl;beautify;indentation},
+	bookmarksnumbered,
+	bookmarksopen,
+	linktocpage,
+    colorlinks=true,
+    linkcolor=blue,
+    citecolor=black,
+}
+\usepackage{cleveref}
+
+\addbibresource{latex-indent}
+\addbibresource{contributors}
+
+
+% http://tex.stackexchange.com/questions/122135/how-to-add-a-png-icon-on-the-right-side-of-a-tcolorbox-title
+\newtcolorbox{warning}{parbox=false,breakable,enhanced,arc=0mm,colback=red!5,colframe=red,leftrule=12mm,%
+	overlay={\node[anchor=north west,outer sep=2pt] at (frame.north west) {\includegraphics[width=8mm]{warning}}; }}
+
+\makeatletter
+\tcbset{
+	addtolol/.style={list entry={\kvtcb at title},add to list={lol}{lstlisting}},
+}
+
+\newtcblisting[use counter=lstlisting]{cmhlistings}[3][]{%
+	width=\linewidth,
+	breakable,
+	colback=blue!5!white,
+	colframe=white!85!black,
+	top=0cm,
+	bottom=0cm,
+	left=6mm,
+	listing only,
+	listing options={#1},
+	center title,
+	title={\color{black}{\scshape Listing \thetcbcounter}: ~#2},label={#3},
+	addtolol,
+}
+
+\lstset{%
+	basicstyle=\small\ttfamily,language={[LaTeX]TeX},
+	%	numbers=left,
+	numberstyle=\ttfamily%\small,
+	breaklines=true,
+	%   frame=single,framexleftmargin=8mm, xleftmargin=8mm,
+	%	prebreak = \raisebox{0ex}[0ex][0ex]{\ensuremath{\hookrightarrow}},
+	%	backgroundcolor=\color{green!5},frameround=fttt,
+	%	rulecolor=\color{blue!70!black},
+	keywordstyle=\color{blue},                    % keywords
+	commentstyle=\color{purple},    % comments
+	tabsize=3,
+	%xleftmargin=1.5em,
+}%
+\lstdefinestyle{yaml}{%
+	numbers=left,
+	numberstyle=\color{black},}
+\lstdefinestyle{demo}{
+	numbers=none,
+	linewidth=1.25\textwidth,
+	columns=fullflexible,
+}
+
+% stars around contributors
+\pgfdeclaredecoration{stars}{initial}{
+	\state{initial}[width=15pt]
+	{
+		\pgfmathparse{round(rnd*100)}
+		\pgfsetfillcolor{yellow!\pgfmathresult!orange}
+		\pgfsetstrokecolor{yellow!\pgfmathresult!red}
+		\pgfnode{star}{center}{}{}{\pgfusepath{stroke,fill}}
+	}
+	\state{final}
+	{
+		\pgfpathmoveto{\pgfpointdecoratedpathlast}
+	}
+}
+
+\newtcolorbox{stars}{%
+	enhanced jigsaw,
+	breakable, % allow page breaks
+	left=0cm,
+	top=0cm,
+	before skip=0.2cm,
+	boxsep=0cm,
+	frame style={draw=none,fill=none}, % hide the default frame
+	colback=white,
+	overlay={
+		\draw[inner sep=0,minimum size=rnd*15pt+2pt]
+		decorate[decoration={stars,segment length=2cm}] {
+			decorate[decoration={zigzag,segment length=2cm,amplitude=0.3cm}] {
+				([xshift=-.5cm,yshift=0.1cm]frame.south west) --  ([xshift=-.5cm,yshift=0.4cm]frame.north west)
+		}};
+		\draw[inner sep=0,minimum size=rnd*15pt+2pt]
+		decorate[decoration={stars,segment length=2cm}] {
+			decorate[decoration={zigzag,segment length=2cm,amplitude=0.3cm}] {
+				([xshift=.75cm,yshift=0.1cm]frame.south east) --  ([xshift=.75cm,yshift=0.6cm]frame.north east)
+		}};
+	},
+	% paragraph skips obeyed within tcolorbox
+	parbox=false,
+}
+
+% copied from /usr/local/texlive/2013/texmf-dist/tex/latex/biblatex/bbx/numeric.bbx
+% the only modification is the \stars and \endstars
+\defbibenvironment{specialbib}
+{\stars\list
+	{\printtext[labelnumberwidth]{%
+		\printfield{prefixnumber}%
+		\printfield{labelnumber}}}
+	{\setlength{\labelwidth}{\labelnumberwidth}%
+		\setlength{\leftmargin}{\labelwidth}%
+		\setlength{\labelsep}{\biblabelsep}%
+		\addtolength{\leftmargin}{\labelsep}%
+		\setlength{\itemsep}{\bibitemsep}%
+		\setlength{\parsep}{\bibparsep}}%
+	\renewcommand*{\makelabel}[1]{\hss##1}}
+{\endlist\endstars}
+{\item}
+
+% see: http://tex.stackexchange.com/questions/2245/verbatim-description-list-item
+\newcommand{\verbitem}[1]{\small\PVerb{#1}}
+% stolen from arara.sty http://mirrors.med.harvard.edu/ctan/support/arara/doc/arara.sty
+%\lstnewenvironment{yaml}[1][]{\lstset{%
+%	basicstyle=\ttfamily,
+%	numbers=left,
+%	xleftmargin=1.5em,
+%	breaklines=true,
+%	numberstyle=\ttfamily\small,
+%	columns=flexible,
+%	mathescape=false,
+%	#1,
+%}}
+%{}
+
+\newcommand{\fixthis}[1]
+{%
+	\marginpar{\huge \color{red} \framebox{FIX}}%
+	\typeout{FIXTHIS: p\thepage : #1^^J}%
+}
+% custom section
+\titleformat{\section}
+{\normalfont\Large\bfseries}
+{\llap{\thesection\hskip.5cm}}
+{0pt}
+{}
+% custom subsection
+\titleformat{\subsection}
+{\normalfont\bfseries}
+{\llap{\thesubsection\hskip.5cm}}
+{0pt}
+{}
+% custom subsubsection
+\titleformat{\subsubsection}
+{\normalfont\bfseries}
+{\llap{\thesubsubsection\hskip.5cm}}
+{0pt}
+{}
+
+
+\titlespacing\section{0pt}{12pt plus 4pt minus 2pt}{-5pt plus 2pt minus 2pt}
+\titlespacing\subsection{0pt}{12pt plus 4pt minus 2pt}{-6pt plus 2pt minus 2pt}
+\titlespacing\subsubsection{0pt}{12pt plus 4pt minus 2pt}{-6pt plus 2pt minus 2pt}
+
+
+% cleveref settings
+\crefname{table}{Table}{Tables}
+\Crefname{table}{Table}{Tables}
+\crefname{figure}{Figure}{Figures}
+\Crefname{figure}{Figure}{Figures}
+\crefname{section}{Section}{Sections}
+\Crefname{section}{Section}{Sections}
+\crefname{listing}{Listing}{Listings}
+\Crefname{listing}{Listing}{Listings}
+
+% headers and footers
+\fancyhf{} % delete current header and footer
+\fancyhead[R]{\bfseries\thepage}
+\fancyheadoffset[L]{3cm}
+\pagestyle{fancy}
+
+% renew plain style
+\fancypagestyle{plain}{%
+\fancyhf{} % clear all header and footer fields
+\renewcommand{\headrulewidth}{0pt}
+\renewcommand{\footrulewidth}{0pt}}
+
+% sidebyside environment
+\newenvironment{sidebyside}{\begin{adjustwidth}{-3cm}{1cm}}{\end{adjustwidth}}
+
+% gitinfo2 settings
+\renewcommand{\gitMark}{\gitBranch\,@\,\gitAbbrevHash{}\,\textbullet{}\,\gitAuthorDate }
+
+% setting up gitinfo2:
+%   copy the file post-xxx-sample.txt from https://www.ctan.org/tex-archive/macros/latex/contrib/gitinfo2
+%   and put it in .git/hooks/post-checkout
+% then
+%   cd .git/hooks
+%   chmod g+x post-checkout
+%   chmod +x post-checkout
+%   cp post-checkout post-commit
+%   cp post-checkout post-merge
+%   cd ../..
+%   git checkout master
+%   git checkout develop
+%   ls .git
+% and you should see gitHeadInfo.gin
+\begin{document}
+% \begin{noindent}
+	\title{\lstinline[basicstyle=\huge\ttfamily]!latexindent.pl!\\[1cm]
+		Version 2.2}
+% \end{noindent}
+\author{Chris Hughes \footnote{and contributors! (See \vref{sec:contributors}.)}}
+\maketitle
+\begin{abstract}
+	\lstinline!latexindent.pl! is a \lstinline!Perl! script that indents \lstinline!.tex! (and other)
+	files according to an indentation scheme that the user can modify to suit their
+	taste. Environments, including those with alignment delimiters (such as \lstinline!tabular!),
+	and commands, including those that can split braces and brackets across lines,
+	are \emph{usually} handled correctly by the script. Options for \lstinline!verbatim!-like
+	environments and indentation after headings (such as \lstinline!\chapter!, \lstinline!\section!, etc)
+	are also available.
+\end{abstract}
+
+\tableofcontents
+\lstlistoflistings
+
+\section{Before we begin}
+\subsection{Thanks}
+I first created \lstinline!latexindent.pl! to help me format chapter files
+in a big project. After I blogged about it on the
+\TeX{} stack exchange \cite{cmhblog} I received some positive feedback and
+follow-up feature requests. A big thank you to Harish Kumar who has really
+helped to drive the script forward and has put it through a number of challenging
+tests--I look forward to more challenges in the future Harish!
+
+The \lstinline!yaml!-based interface of \lstinline!latexindent.pl! was inspired
+by the wonderful \lstinline!arara! tool; any similarities are deliberate, and
+I hope that it is perceived as the compliment that it is. Thank you to Paulo Cereda and the
+team for releasing this awesome tool; I initially worried that I was going to
+have to make a GUI for \lstinline!latexindent.pl!, but the release of \lstinline!arara!
+has meant there is no need. Thank you to Paulo for all of your advice and
+encouragement.
+
+There have been several contributors to the project so far (and hopefully more in
+the future!); thank you very much to the people detailed in \vref{sec:contributors}
+for their valued contributions.
+
+\subsection{License}
+\lstinline!latexindent.pl! is free and open source, and it always will be.
+Before you start using it on any important files, bear in mind that \lstinline!latexindent.pl! has the option to overwrite your \lstinline!.tex! files.
+It will always make at least one backup (you can choose how many it makes, see \cpageref{page:onlyonebackup})
+but you should still be careful when using it. The script has been tested on many
+files, but there are some known limitations (see \cref{sec:knownlimitations}).
+You, the user, are responsible for ensuring that you maintain backups of your files
+before running \lstinline!latexindent.pl! on them. I think it is important at this
+stage to restate an important part of the license here:
+\begin{quote}\itshape
+	This program is distributed in the hope that it will be useful,
+	but WITHOUT ANY WARRANTY; without even the implied warranty of
+	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+	GNU General Public License for more details.
+\end{quote}
+There is certainly no malicious intent in releasing this script, and I do hope
+that it works as you expect it to--if it does not, please first of all
+make sure that you have the correct settings, and then feel free to let me know with a
+complete minimum working example as I would like to improve the code as much as possible.
+
+\begin{warning}
+	Before you try the script on anything important (like your thesis), test it
+	out on the sample files that come with it in the \lstinline!success! directory.
+\end{warning}
+
+
+\section{Demonstration: before and after}
+Let's give a demonstration of some before and after code--after all, you probably
+won't want to try the script if you don't much like the results. You might also
+like to watch the video demonstration I made on youtube \cite{cmh:videodemo}
+
+As you look at \crefrange{lst:filecontentsbefore}{lst:pstricksafter}, remember
+that \lstinline!latexindent.pl! is just following its rules--there is nothing
+particular about these code snippets. All of the rules can be modified
+so that each user can personalize their indentation scheme.
+
+In each of the samples given in \crefrange{lst:filecontentsbefore}{lst:pstricksafter}
+the `before' case is a `worst case scenario' with no effort to make indentation. The `after'
+result would be the same, regardless of the leading white space at the beginning of
+each line which is stripped by \lstinline!latexindent.pl! (unless a \lstinline!verbatim!-like
+environment or \lstinline!noIndentBlock! is specified--more on this in \cref{sec:defuseloc}).
+
+  \begin{sidebyside}
+	\noindent
+	\begin{minipage}{.6\textwidth}
+		\begin{cmhlistings}[style=demo]{\lstinline!filecontents! before}{lst:filecontentsbefore}
+\begin{filecontents}{mybib.bib}
+ at online{strawberryperl,
+title="Strawberry Perl",
+url="http://strawberryperl.com/"}
+ at online{cmhblog,
+title="A Perl script ...
+url="...
+\end{filecontents}
+		\end{cmhlistings}
+	\end{minipage}%
+	\noindent
+	\begin{minipage}{.6\textwidth}
+		\begin{cmhlistings}[style=demo]{\lstinline!filecontents! after}{lst:filecontentsafter}
+\begin{filecontents}{mybib.bib}
+	@online{strawberryperl,
+		title="Strawberry Perl",
+		url="http://strawberryperl.com/"}
+	@online{cmhblog,
+		title="A Perl script for ...
+		url="...
+\end{filecontents}
+		\end{cmhlistings}
+	\end{minipage}
+	\begin{minipage}{.6\textwidth}
+		\begin{cmhlistings}[style=demo]{\lstinline!tikzset! before}{lst:tikzsetbefore}
+\tikzset{
+shrink inner sep/.code={
+\pgfkeysgetvalue...
+\pgfkeysgetvalue...
+}
+}
+		\end{cmhlistings}
+	\end{minipage}%
+	\begin{minipage}{.6\textwidth}
+		\begin{cmhlistings}[style=demo]{\lstinline!tikzset! after}{lst:tikzsetafter}
+\tikzset{
+	shrink inner sep/.code={
+		\pgfkeysgetvalue...
+		\pgfkeysgetvalue...
+	}
+}
+		\end{cmhlistings}
+	\end{minipage}
+	\begin{minipage}{.6\textwidth}
+		\begin{cmhlistings}[style=demo]{\lstinline!pstricks! before}{lst:pstricksbefore}
+\def\Picture#1{%
+\def\stripH{#1}%
+\begin{pspicture}[showgrid...
+\psforeach{\row}{%
+{{3,2.8,2.7,3,3.1}},% <=== Only this
+{2.8,1,1.2,2,3},%
+...
+}{%
+\expandafter...
+}
+\end{pspicture}}
+		\end{cmhlistings}
+	\end{minipage}%
+	\begin{minipage}{.6\textwidth}
+		\begin{cmhlistings}[style=demo]{\lstinline!pstricks! after}{lst:pstricksafter}
+\def\Picture#1{%
+	\def\stripH{#1}%
+	\begin{pspicture}[showgrid...
+		\psforeach{\row}{%
+			{{3,2.8,2.7,3,3.1}},% <===
+			{2.8,1,1.2,2,3},%
+            ...
+			}{%
+			\expandafter...
+		}
+	\end{pspicture}}
+		\end{cmhlistings}
+	\end{minipage}
+  \end{sidebyside}
+
+\section{How to use the script}
+\lstinline!latexindent.pl! ships as part of the \TeX Live distribution for
+Linux and Mac users; \lstinline!latexindent.exe! ships as part of the \TeX Live
+and MiK\TeX distributions for Windows users. These files are also available
+from github \cite{latexindent-home} should you wish to use them without
+a \TeX{} distribution; in this case, you may like to read \vref{sec:updating-path}
+which details how the \lstinline!path! variable can be updated.
+
+In what follows, we will always refer to \lstinline!latexindent.pl!, but depending on
+your operating system and preference, you might substitute \lstinline!latexindent.exe! or
+simply \lstinline!latexindent!.
+
+There are two ways to use \lstinline!latexindent.pl!: from the command line,
+and using \lstinline!arara!; we discuss these in \cref{sec:commandline} and
+\cref{sec:arara} respectively. We will discuss how to change the settings and 
+behaviour of the script in \vref{sec:defuseloc}.
+
+\lstinline!latexindent.pl! ships with \lstinline!latexindent.exe! for Windows
+users, so that you can use the script with or without a Perl distribution.
+If you plan to use \lstinline!latexindent.pl! (i.e, the original Perl script) then you will
+need a few standard Perl modules--see \vref{sec:requiredmodules} for details.
+
+\subsection{From the command line}\label{sec:commandline}
+\lstinline!latexindent.pl! has a number of different switches/flags/options, which
+can be combined in any way that you like, either in short or long form as detailed below. 
+\lstinline!latexindent.pl!  produces a \lstinline!.log! file, \lstinline!indent.log! every time it
+is run. There is a base of information that is written to \lstinline!indent.log!,
+but other additional information will be written depending
+on which of the following options are used.
+
+\begin{itemize}[labelsep=.25cm]
+	\item[] \lstinline!latexindent.pl!
+
+	      This will output a welcome message to the terminal, including the version number
+	      and available options.
+	\item[\verbitem{-h, --help}] \lstinline!latexindent.pl -h!
+
+	      As above this will output a welcome message to the terminal, including the version number
+	      and available options.
+	\item[] \lstinline!latexindent.pl myfile.tex!
+
+	      This will operate on \lstinline!myfile.tex!, but will simply output to your terminal; \lstinline!myfile.tex! will	not be changed in any way using this command.
+	\item[\verbitem{-w, --overwrite}] \lstinline!latexindent.pl -w myfile.tex!
+
+	      This \emph{will} overwrite \lstinline!myfile.tex!, but it will
+	      make a copy of \lstinline!myfile.tex! first. You can control the name of
+	      the extension (default is \lstinline!.bak!), and how many different backups are made--
+	      more on this in \cref{sec:defuseloc}; see \lstinline!backupExtension! and \lstinline!onlyOneBackUp!.
+
+	      Note that if \lstinline!latexindent.pl! can not create the backup, then it
+	      will exit without touching your original file; an error message will be given
+	      asking you to check the permissions of the backup file.
+	\item[\verbitem{-o,--outputfile}] \lstinline!latexindent.pl -o myfile.tex outputfile.tex!
+
+	      This will indent \lstinline!myfile.tex! and output it to \lstinline!outputfile.tex!,
+	      overwriting it (\lstinline!outputfile.tex!) if it already exists. Note that if \lstinline!latexindent.pl! is called with both
+	      the \lstinline!-w! and \lstinline!-o! switches, then \lstinline!-w! will
+	      be ignored and \lstinline!-o! will take priority (this seems safer than the
+	      other way round).
+
+	      Note that using \lstinline!-o! is equivalent to using \lstinline!latexindent.pl myfile.tex > outputfile.tex!
+	\item[\verbitem{-s, --silent}] \lstinline!latexindent.pl -s myfile.tex!
+
+	      Silent mode: no output will be given to the terminal.
+	\item[\verbitem{-t, --trace}] \lstinline!latexindent.pl -t myfile.tex!
+
+	      \label{page:traceswitch}
+	      Tracing mode: verbose output will be given to \lstinline!indent.log!. This
+	      is useful if \lstinline!latexindent.pl! has made a mistake and you're
+	      trying to find out where and why. You might also be interested in learning
+	      about \lstinline!latexindent.pl!'s thought process--if so, this
+	      switch is for you.
+	\item[\verbitem{-tt, --ttrace}] \lstinline!latexindent.pl -tt myfile.tex!
+
+      \emph{More detailed} tracing mode: this option gives more details to \lstinline!indent.log!
+      than the standard \lstinline!trace! option.
+	\item[\verbitem{-l, --local[=myyaml.yaml]}] \lstinline!latexindent.pl -l myfile.tex!
+
+\lstinline!latexindent.pl -l=myyaml.yaml myfile.tex!
+
+\lstinline!latexindent.pl -l myyaml.yaml myfile.tex!
+
+
+	      \label{page:localswitch}
+	      Local settings: you might like to read \cref{sec:defuseloc} before
+	      using this switch. \lstinline!latexindent.pl! will always load \lstinline!defaultSettings.yaml!
+	      and if it is called with the \lstinline!-l! switch and it finds \lstinline!localSettings.yaml!
+	      in the same directory as \lstinline!myfile.tex! then these settings will be
+	      added to the indentation scheme. Information will be given in \lstinline!indent.log! on
+	      the success or failure of loading \lstinline!localSettings.yaml!.
+
+The \lstinline!-l! flag can take an \emph{optional} parameter which details the name of a \lstinline!yaml! file
+that resides in the same directory as \lstinline!myfile.tex!; you can use this option if you would 
+like to load a settings file in the current working directory that is \emph{not} called \lstinline!localSettings.yaml!.
+
+	\item[\verbitem{-d, --onlydefault}] \lstinline!latexindent.pl -d myfile.tex!
+
+	      Only \lstinline!defaultSettings.yaml!: you might like to read \cref{sec:defuseloc} before
+	      using this switch. By default, \lstinline!latexindent.pl! will always search for
+	      \lstinline!indentconfig.yaml! or \lstinline!.indentconfig.yaml!  in your home directory. If you would prefer it not to do so
+	      then (instead of deleting or renaming \lstinline!indentconfig.yaml!/\lstinline!.indentconfig.yaml!) you can simply
+	      call the script with the \lstinline!-d! switch; note that this will also tell
+	      the script to ignore \lstinline!localSettings.yaml! even if it has been called with the
+	      \lstinline!-l! switch.
+
+	\item[\verbitem{-c, --cruft=<directory>}]\lstinline!latexindent.pl -c=/path/to/directory/ myfile.tex!
+
+	      If you wish to have backup files and \lstinline!indent.log! written to a directory
+	      other than the current working directory, then you can send these `cruft' files
+	      to another directory.
+	      % this switch was made as a result of http://tex.stackexchange.com/questions/142652/output-latexindent-auxiliary-files-to-a-different-directory
+\end{itemize}
+
+\lstinline!latexindent.pl! can also be called on a file without the file extension, for
+example \lstinline[breaklines=true,breakatwhitespace=true,]!latexindent.pl myfile! and in which case, you can specify
+the order in which extensions are searched for; see \vref{lst:fileExtensionPreference}
+for full details.
+
+\subsection{From \lstinline!arara!}\label{sec:arara}
+Using \lstinline!latexindent.pl! from the command line is fine for some folks, but
+others may find it easier to use from \lstinline!arara!. \lstinline!latexindent.pl!
+ships with an \lstinline!arara! rule, \lstinline!indent.yaml!, which can be copied
+to the directory of
+your other \lstinline!arara! rules; otherwise  you can add the directory in which \lstinline!latexindent.pl!
+resides to your \lstinline!araraconfig.yaml! file.
+
+Once you have told \lstinline!arara! where to find your \lstinline!indent! rule,
+you can use it any of the ways described in \cref{lst:arara} (or combinations thereof).
+In fact, \lstinline!arara! allows yet greater flexibility--you can use \lstinline!yes/no!, \lstinline!true/false!, or \lstinline!on/off! to toggle the various options.
+
+\begin{cmhlistings}[style=demo,escapeinside={(*@}{@*)}]{\lstinline!arara! sample usage}{lst:arara}
+%(*@@*) arara: indent
+%(*@@*) arara: indent: {overwrite: yes}
+%(*@@*) arara: indent: {output: myfile.tex}
+%(*@@*) arara: indent: {silent: yes}
+%(*@@*) arara: indent: {trace: yes}
+%(*@@*) arara: indent: {localSettings: yes}
+%(*@@*) arara: indent: {onlyDefault: on}
+%(*@@*) arara: indent: { cruft: /home/cmhughes/Desktop }
+\documentclass{article}
+...
+\end{cmhlistings}
+
+Hopefully the use of these rules is fairly self-explanatory, but for completeness
+\cref{tab:orbsandswitches} shows the relationship between \lstinline!arara! directive arguments and the
+switches given in \cref{sec:commandline}.
+
+\begin{table}[!ht]
+	\centering
+	\caption{\lstinline!arara! directive arguments and corresponding switches}
+	\label{tab:orbsandswitches}
+	\begin{tabular}{lc}
+		\toprule
+		\lstinline!arara! directive argument & switch         \\
+		\midrule
+		\lstinline!overwrite!                & \lstinline!-w! \\
+		\lstinline!output!                   & \lstinline!-o! \\
+		\lstinline!silent!                   & \lstinline!-s! \\
+		\lstinline!trace!                    & \lstinline!-t! \\
+		\lstinline!localSettings!            & \lstinline!-l! \\
+		\lstinline!onlyDefault!              & \lstinline!-d! \\
+		\lstinline!cruft!                    & \lstinline!-c! \\
+		\bottomrule
+	\end{tabular}
+\end{table}
+
+The \lstinline!cruft! directive does not work well when used with
+directories that contain spaces.
+
+\section{default, user, and local settings}\label{sec:defuseloc}
+\lstinline!latexindent.pl! loads its settings from \lstinline!defaultSettings.yaml!
+(rhymes with camel). The idea is to separate the behaviour of the script
+from the internal working--this is very similar to the way that we separate content
+from form when writing our documents in \LaTeX.
+
+\subsection{\lstinline!defaultSettings.yaml!}
+If you look in \lstinline!defaultSettings.yaml! you'll find the switches
+that govern the behaviour of \lstinline!latexindent.pl!. If you're not sure where
+\lstinline!defaultSettings.yaml! resides on your computer, don't worry as \lstinline!indent.log!
+will tell you where to find it.
+\lstinline!defaultSettings.yaml! is commented,
+but here is a description of what each switch is designed to do. The default
+value is given in each case.
+
+You can certainly feel free to edit \lstinline!defaultSettings.yaml!, but
+this is not ideal as it may be overwritten when you update your \TeX{} distribution --
+all of your hard work tweaking the script would be undone! Don't worry,
+there's a solution, feel free to peek ahead to \cref{sec:indentconfig} if you like.
+\begin{itemize}
+	\item[\verbitem{defaultIndent}] \lstinline!"\t"!
+
+	      This is the default indentation (\lstinline!\t! means a tab) used in the absence of other details
+	      for the command or environment we are working with--see \lstinline!indentRules!
+	      for more details (\cpageref{page:indentRules}).
+
+	      If you're interested in experimenting with \lstinline!latexindent.pl! then you
+	      can \emph{remove} all indentation by setting \lstinline!defaultIndent: ""!
+	\item[\verbitem{backupExtension}] \lstinline!.bak!
+
+	      If you call \lstinline!latexindent.pl! with the \lstinline!-w! switch (to overwrite
+	      \lstinline!myfile.tex!) then it will create a backup file before doing
+	      any indentation: \lstinline!myfile.bak0!
+
+	      By default, every time you call \lstinline!latexindent.pl! after this with
+	      the \lstinline!-w! switch it will create \lstinline!myfile.bak1!, \lstinline!myfile.bak2!,
+	      etc.
+	\item[\verbitem{onlyOneBackUp}] \lstinline!0!
+
+	      \label{page:onlyonebackup}
+	      If you don't want a backup for every time that you call \lstinline!latexindent.pl! (so
+	      you don't want \lstinline!myfile.bak1!, \lstinline!myfile.bak2!, etc) and you simply
+	      want \lstinline!myfile.bak! (or whatever you chose \lstinline!backupExtension! to be)
+	      then change \lstinline!onlyOneBackUp! to \lstinline!1!.
+
+	\item[\verbitem{maxNumberOfBackUps}]\lstinline!0!
+
+	      Some users may only want a finite number of backup files,
+	      say at most $3$, in which case, they can change this switch.
+	      The smallest value of \lstinline!maxNumberOfBackUps! is $0$ which will \emph{not}
+	      prevent backup files being made--in this case, the behaviour will be dictated
+	      entirely by \lstinline!onlyOneBackUp!.
+	      %\footnote{This was a feature request made on \href{https://github.com/cmhughes/latexindent.plx}{github}}
+	\item[\verbitem{cycleThroughBackUps}]\lstinline!0!
+
+	      Some users may wish to cycle through backup files, by deleting the
+	      oldest backup file and keeping only the most recent; for example,
+	      with \lstinline!maxNumberOfBackUps: 4!, and \lstinline!cycleThroughBackUps!
+	      set to \lstinline!1!  then the \lstinline!copy! procedure given in \cref{lst:cycleThroughBackUps}
+	      would be obeyed.
+
+	      \begin{cmhlistings}[language=Perl]{\lstinline!cycleThroughBackUps!}{lst:cycleThroughBackUps}
+copy myfile.bak1 to myfile.bak0
+copy myfile.bak2 to myfile.bak1
+copy myfile.bak3 to myfile.bak2
+copy myfile.bak4 to myfile.bak3
+	\end{cmhlistings}
+
+	\item[\verbitem{indentPreamble}] \lstinline!0!
+
+	      The preamble of a document can sometimes contain some trickier code
+	      for \lstinline!latexindent.pl! to work with. By default, \lstinline!latexindent.pl!
+	      won't try to operate on the preamble, but if you'd like it to try then
+	      change \lstinline!indentPreamble! to \lstinline!1!.
+	\item[\verbitem{alwaysLookforSplitBraces}] \lstinline!1!
+
+	      This switch tells \lstinline!latexindent.pl! to look for commands that
+	      can split \emph{braces} across lines, such as \lstinline!parbox!, \lstinline!tikzset!, etc. In older
+	      versions of \lstinline!latexindent.pl! you had to specify each one in \lstinline!checkunmatched!--this
+	      clearly became tedious, hence the introduction of \lstinline!alwaysLookforSplitBraces!.
+
+	      \emph{As long as you leave this switch on (set to 1) you don't need to specify which
+	      	commands can split braces across lines--you can ignore the
+	      	fields \lstinline!checkunmatched! and \lstinline!checkunmatchedELSE! described
+	      	later on \cpageref{lst:checkunmatched}}.
+	\item[\verbitem{alwaysLookforSplitBrackets}] \lstinline!1!
+
+	      This switch tells \lstinline!latexindent.pl! to look for commands that
+	      can split \emph{brackets} across lines, such as \lstinline!psSolid!, \lstinline!pgfplotstabletypeset!,
+	      etc. In older versions of \lstinline!latexindent.pl! you had to specify each one in \lstinline!checkunmatchedbracket!--
+	      this clearly became tedious, hence the introduction of \lstinline!alwaysLookforSplitBraces!.
+
+	      \emph{As long as you leave this switch on (set to 1) you don't need to specify which
+	      	commands can split brackets across lines--you can ignore \lstinline!checkunmatchedbracket! described later on
+	      	\cpageref{lst:checkunmatched}}.
+
+	\item[\verbitem{removeTrailingWhitespace}] \lstinline!0!
+
+	      By default \lstinline!latexindent.pl! indents every line (including empty lines)
+	      which creates `trailing white space' feared by most version control systems. If
+	      this option is set to \lstinline!1!, trailing white space is removed from all
+	      lines, also non-empty ones. In general this should not create any problems, but
+	      by precaution this option is turned off by default. Thanks to \cite{vosskuhle} for
+	      providing this feature.
+
+	\item[\verbitem{lookForAlignDelims}] This is the first example of a field
+	      in \lstinline!defaultSettings.yaml! that has more than one line; \cref{lst:aligndelims:basic}
+	      shows more details. In fact, the fields in \verbitem{lookForAlignDelims} can actually
+          take two different forms: the \emph{basic} version is shown in \cref{lst:aligndelims:basic} 
+          and the \emph{advanced} version in \cref{lst:aligndelims:advanced}; we will discuss each in turn.
+
+	      \begin{cmhlistings}[style=yaml]{\lstinline!lookForAlignDelims! (basic)}{lst:aligndelims:basic}
+lookForAlignDelims:
+   tabular: 1
+   tabularx: 1
+   longtable: 1
+   array: 1
+   matrix: 1
+   bmatrix: 1
+   pmatrix: 1
+   align: 1
+   align*: 1
+   alignat: 1
+   alignat*: 1
+   aligned: 1
+   cases: 1
+   dcases: 1
+   pmatrix: 1
+   listabla: 1
+	\end{cmhlistings}
+
+	The environments specified in this field will be operated on in a special way  by \lstinline!latexindent.pl!. In particular, it will try and align each column by its alignment
+	tabs. It does have some limitations (discussed further in \cref{sec:knownlimitations}),
+	but in many cases it will produce results such as those in \cref{lst:tabularbefore:basic,lst:tabularafter:basic}.
+
+	\begin{minipage}{.5\textwidth}
+		\begin{cmhlistings}[style=demo,columns=fixed]{\lstinline!tabular! before}{lst:tabularbefore:basic}
+\begin{tabular}{cccc}
+1&	2 &3       &4\\
+5& &6       &\\
+\end{tabular}
+		\end{cmhlistings}
+	\end{minipage}%
+	\begin{minipage}{.5\textwidth}
+		\begin{cmhlistings}[style=demo,columns=fixed]{\lstinline!tabular! after (basic)}{lst:tabularafter:basic}
+\begin{tabular}{cccc}
+ 1 & 2 & 3 & 4 \\
+ 5 &   & 6 &   \\
+\end{tabular}
+		\end{cmhlistings}
+	\end{minipage}
+
+	If you find that \lstinline!latexindent.pl! does not perform satisfactorily on such
+	environments then you can either remove them from \lstinline!lookForAlignDelims! altogether, or set the relevant key to \lstinline!0!, for example \lstinline!tabular: 0!, or if you just want to ignore \emph{specific}
+	instances of the environment, you could wrap them in something from \lstinline!noIndentBlock! (see \cref{lst:noIndentBlock}).
+
+    If you wish to remove the alignment of the \lstinline!\\! within a delimiter-aligned block, then the
+    advanced form of \lstinline!lookForAlignDelims! shown in \cref{lst:aligndelims:advanced} is for you. 
+	      \begin{cmhlistings}[style=yaml]{\lstinline!lookForAlignDelims! (advanced)}{lst:aligndelims:advanced}
+lookForAlignDelims:
+   tabular: 
+      delims: 1
+      alignDoubleBackSlash: 0
+      spacesBeforeDoubleBackSlash: 0
+   tabularx:
+      delims: 1
+   longtable: 1
+	\end{cmhlistings}
+
+    Note that you can use a mixture of the basic and advanced form: in \cref{lst:aligndelims:advanced} \lstinline!tabular! and \lstinline!tabularx! 
+    are advanced and \lstinline!longtable! is basic. When using the advanced form, each field should receive at least 1 sub-field, and \emph{can} (but does not have to) receive up to 3 fields: 
+    \begin{itemize}
+      \item \lstinline!delims!: switch equivalent to simply specifying, for example, \lstinline!tabular: 1! in
+        the basic version shown in \cref{lst:aligndelims:basic} (default: 1);
+      \item \lstinline!alignDoubleBackSlash!: switch to determine if \lstinline!\\! should be aligned (default: 1);
+      \item \lstinline!spacesBeforeDoubleBackSlash!: optionally, specifies the number of spaces to be inserted
+        before (non-aligned) \lstinline!\\!. In order to use this field, \lstinline!alignDoubleBackSlash! needs
+        to be set to 0 (default: 0).
+    \end{itemize}
+    
+    With the settings shown in \cref{lst:aligndelims:advanced} we receive the before-and-after results shown in
+    \cref{lst:tabularbefore:advanced,lst:tabularafter:advanced}; note that the ampersands have been aligned, but 
+    the \lstinline!\\! have not (compare the alignment of \lstinline!\\! in \cref{lst:tabularafter:basic,lst:tabularafter:advanced}).
+
+	\begin{minipage}{.5\textwidth}
+		\begin{cmhlistings}[style=demo,columns=fixed]{\lstinline!tabular! before }{lst:tabularbefore:advanced}
+\begin{tabular}{cccc}
+1&	2 &3       &4\\
+5& &6       &\\
+\end{tabular}
+		\end{cmhlistings}
+	\end{minipage}%
+	\begin{minipage}{.5\textwidth}
+		\begin{cmhlistings}[style=demo,columns=fixed]{\lstinline!tabular! after (advanced)}{lst:tabularafter:advanced}
+\begin{tabular}{cccc}
+ 1 & 2 & 3 & 4\\
+ 5 &   & 6 &\\
+\end{tabular}
+		\end{cmhlistings}
+	\end{minipage}
+
+    Using  \lstinline!spacesBeforeDoubleBackSlash: 3! gives \cref{lst:tabularbefore:spacing,lst:tabularafter:spacing}, 
+    note the spacing before the \lstinline!\\! in \cref{lst:tabularafter:spacing}.
+
+	\begin{minipage}{.5\textwidth}
+		\begin{cmhlistings}[style=demo,columns=fixed]{\lstinline!tabular! before}{lst:tabularbefore:spacing}
+\begin{tabular}{cccc}
+1&	2 &3       &4\\
+5& &6       &\\
+\end{tabular}
+		\end{cmhlistings}
+	\end{minipage}%
+	\begin{minipage}{.5\textwidth}
+		\begin{cmhlistings}[style=demo,columns=fixed]{\lstinline!tabular! after (spacing)}{lst:tabularafter:spacing}
+\begin{tabular}{cccc}
+ 1 & 2 & 3 & 4   \\
+ 5 &   & 6 &   \\
+\end{tabular}
+		\end{cmhlistings}
+	\end{minipage}
+
+	
+
+
+	If you have blocks of code that you wish to align at the \&  character that
+	      are \emph{not} wrapped in, for example, \lstinline!\begin{tabular}...\end{tabular}!, then you use the mark up
+	      illustrated in \cref{lst:alignmentmarkup}. Note that the \lstinline!%*! must be next to
+	      each other, but that there can be any number of spaces (possibly none) between the
+	      \lstinline!*! and \lstinline!\begin{tabular}!; note also that you may use any
+	      environment name that you have specified in \lstinline!lookForAlignDelims!.
+	      \begin{cmhlistings}[style=demo,columns=fixed]{Mark up for aligning delimiters outside of environments}{lst:alignmentmarkup}
+\matrix{%
+%* \begin{tabular}
+ 1 & 2 & 3 & 4 \\
+ 5 &   & 6 &   \\
+%* \end{tabular}
+}
+	\end{cmhlistings}
+
+	\item[\verbitem{verbatimEnvironments}] A field that contains a list of environments
+	      that you would like left completely alone--no indentation will be done
+	      to environments that you have specified in this field--see \cref{lst:verbatimEnvironments}.
+
+
+	      \begin{cmhlistings}[style=yaml]{\lstinline!verbatimEnvironments!}{lst:verbatimEnvironments}
+verbatimEnvironments:
+    verbatim: 1
+    lstlisting: 1
+	\end{cmhlistings}
+	Note that if  you put an environment in \lstinline!verbatimEnvironments!
+	and in other fields such as \lstinline!lookForAlignDelims! or \lstinline!noAdditionalIndent!
+	then \lstinline!latexindent.pl! will \emph{always} prioritize \lstinline!verbatimEnvironments!.
+
+	\item[\verbitem{noIndentBlock}] If you have a block of code that you don't
+	      want \lstinline!latexindent.pl! to touch (even if it is \emph{not} a verbatim-like
+	      environment) then you can wrap it in an environment from \lstinline!noIndentBlock!;
+	      you can use any name you like for this, provided you populate it as demonstrate in
+	      \cref{lst:noIndentBlock}.
+
+	      \begin{cmhlistings}[style=yaml]{\lstinline!noIndentBlock!}{lst:noIndentBlock}
+noIndentBlock:
+    noindent: 1
+    cmhtest: 1
+	\end{cmhlistings}
+
+	Of course, you don't want to have to specify these as null environments
+	in your code, so you use them with a comment symbol, \lstinline!%!, followed
+	by as many spaces (possibly none) as you like; see \cref{lst:noIndentBlockdemo} for
+	example.
+	\begin{cmhlistings}[style=demo,escapeinside={(*@}{@*)}]{\lstinline!noIndentBlock! demonstration}{lst:noIndentBlockdemo}
+%(*@@*) \begin{noindent}
+        this code
+                won't
+     be touched
+                    by
+             latexindent.pl!
+%(*@@*)\end{noindent}
+	\end{cmhlistings}
+
+	\item[\verbitem{noAdditionalIndent}] If you would prefer some of your
+	      environments or commands not to receive any additional indent, then
+	      populate \lstinline!noAdditionalIndent!; see \cref{lst:noAdditionalIndent}.
+	      Note that these environments will still receive the \emph{current} level
+	      of indentation unless they belong to \lstinline!verbatimEnvironments!, or \lstinline!noIndentBlock!.
+
+	      \begin{cmhlistings}[style=yaml]{\lstinline!noAdditionalIndent!}{lst:noAdditionalIndent}
+noAdditionalIndent:
+    document: 1
+    myexample: 1
+    mydefinition: 1
+    problem: 1
+    exercises: 1
+    mysolution: 1
+    foreach: 0
+    widepage: 1
+    comment: 1
+    \[: 1
+    \]: 1
+    frame: 0
+	\end{cmhlistings}
+	Note in particular from \cref{lst:noAdditionalIndent} that if you wish content within
+	\lstinline!\[!  and \lstinline!\]! to receive no additional indentation then
+	you have to specify \emph{both} as \lstinline!1! (the default is \lstinline!0!).
+	If you do not specify both as the same value you may get some interesting results!
+	\item[\verbitem{indentRules}] If\label{page:indentRules} you would prefer to specify
+	      individual rules for certain environments or commands, just
+	      populate \lstinline!indentRules!; see \cref{lst:indentRules}
+
+	      \begin{cmhlistings}[style=yaml]{\lstinline!indentRules!}{lst:indentRules}
+indentRules:
+   myenvironment: "\t\t"
+   anotherenvironment: "\t\t\t\t"
+   \[: "\t"
+	\end{cmhlistings}      %%%%%\] just here to stop vim from colouring the rest of my code
+	Note that in contrast to \lstinline!noAdditionalIndent! you do \emph{not}
+	need to specify both \lstinline!\[! and \lstinline!\]! in this field.
+
+	If you put an environment in both \lstinline!noAdditionalIndent! and in
+	\lstinline!indentRules! then \lstinline!latexindent.pl! will resolve the conflict
+	by ignoring \lstinline!indentRules! and prioritizing \lstinline!noAdditionalIndent!.
+	You will get a warning message in \lstinline!indent.log!; note that you will only
+	get one warning message per command or environment. Further discussion
+	is given in \cref{sec:fieldhierachy}.
+
+	\item[\verbitem{indentAfterHeadings}] This field enables the user to specify
+	      indentation rules that take effect after heading commands such as \lstinline!\part!, \lstinline!\chapter!,
+	      \lstinline!\section!, \lstinline!\subsection*! etc. This field is slightly different from most
+	      of the fields that we have considered previously, because each element is
+	      itself a field which has two elements: \lstinline!indent! and \lstinline!level!. (Similar 
+          in structure to the advanced form of  \lstinline!lookForAlignDelims! in \cref{lst:aligndelims:advanced}.)
+	      \begin{cmhlistings}[style=yaml]{\lstinline!indentAfterHeadings!}{lst:indentAfterHeadings}
+indentAfterHeadings:
+    part:
+       indent: 0
+       level: 1
+    chapter:
+       indent: 0
+       level: 2
+    section:
+       indent: 0
+       level: 3
+    ...
+	\end{cmhlistings}
+	The default settings do \emph{not} place indentation after a heading--you
+	can easily switch them on by changing \lstinline!indent: 0! to \lstinline!indent: 1!.
+	The \lstinline!level! field tells \lstinline!latexindent.pl! the hierarchy of the heading
+	structure in your document. You might, for example, like to have both \lstinline!section!
+	and \lstinline!subsection! set with \lstinline!level: 3! because you do not want the indentation to go too deep.
+
+	You can add any of your own custom heading commands to this field, specifying the \lstinline!level!
+	as appropriate.  You can also specify your own indentation in \lstinline!indentRules!--
+	you will find the default \lstinline!indentRules! contains \lstinline!chapter: " "! which
+	tells \lstinline!latexindent.pl! simply to use a space character after \lstinline!\chapter! headings
+	(once \lstinline!indent! is set to \lstinline!1! for \lstinline!chapter!).
+
+	\item[\verbitem{indentAfterItems}] The environments specified in \lstinline!indentAfterItems!  tell
+	      \lstinline!latexindent.pl! to look for \lstinline!\item! commands; if these switches are set to \lstinline!1!
+	      then indentation will be performed so as indent the code after each \lstinline!item!.
+	      \begin{cmhlistings}{\lstinline!indentAfterItems!}{lst:indentafteritems}
+indentAfterItems:
+    itemize: 1
+    enumerate: 1
+	\end{cmhlistings}
+	A demonstration is given in \cref{lst:itemsbefore,lst:itemsafter}
+
+	\begin{minipage}{.5\textwidth}
+		\begin{cmhlistings}[style=demo,xleftmargin=-3mm,columns=fixed]{\lstinline!items! before}{lst:itemsbefore}
+\begin{itemize}
+\item some text here
+some more text here
+some more text here
+\item another item
+\end{itemize}
+		\end{cmhlistings}
+	\end{minipage}%
+	\begin{minipage}{.5\textwidth}
+		\begin{cmhlistings}[style=demo,xleftmargin=-3mm,columns=fixed]{\lstinline!items! after}{lst:itemsafter}
+\begin{itemize}
+	\item some text here
+		   some more text here
+		   some more text here
+	\item another item
+\end{itemize}
+		\end{cmhlistings}
+	\end{minipage}
+
+	\item[\verbitem{itemNames}] If you have your own \lstinline!item! commands (perhaps you
+	      prefer to use \lstinline!myitem!, for example)
+	      then you can put populate them in \lstinline!itemNames!.
+	      For example, users of the \lstinline!exam! document class might like to add
+	      \lstinline!parts! to \lstinline!indentAfterItems! and \lstinline!part! to \lstinline!itemNames!
+	      to their user settings--see \vref{sec:indentconfig} for details of how to configure user settings,
+	      and \vref{lst:mysettings} in particular.\label{page:examsettings}
+
+	\item[\verbitem{constructIfElseFi}] The commands specified in this field
+	      will tell \lstinline!latexindent.pl! to look for constructs that
+	      have the form \lstinline!\if...! \lstinline!\else...! \lstinline!\fi!, such as,
+	      for example, \lstinline!\ifnum!; see \cref{lst:iffibefore,lst:iffiafter} for
+	      a before-and-after demonstration.
+
+	      \begin{minipage}{.5\textwidth}
+	      	\begin{cmhlistings}[style=demo,xleftmargin=-3mm,columns=fixed]{\lstinline!if-else-fi! construct before}{lst:iffibefore}
+\ifnum\radius>5
+\ifnum\radius<16
+\draw[decorate,...
+\fi
+\fi
+	      	\end{cmhlistings}
+	      \end{minipage}%
+	      \begin{minipage}{.5\textwidth}
+	      	\begin{cmhlistings}[style=demo,xleftmargin=-3mm,columns=fixed]{\lstinline!if-else-fi! construct after}{lst:iffiafter}
+\ifnum\radius>5
+    \ifnum\radius<16
+    	\draw[decorate,...
+	\fi
+\fi
+	      	\end{cmhlistings}
+	      \end{minipage}
+
+	\item[\verbitem{fileExtensionPreference}] \lstinline!latexindent.pl! can be called to
+	      act on a file without
+	      specifying the file extension.  For example we can call \lstinline!latexindent.pl myfile!
+	      in which case the script will look for \lstinline!myfile! with the extensions
+	      specified in \lstinline!fileExtensionPreference! in their numeric order. If
+	      no match is found, the script will exit. As with all of the fields, you should
+	      change and/or add to this as necessary.
+	      \begin{cmhlistings}[style=yaml]{\lstinline!fileExtensionPreference!}{lst:fileExtensionPreference}
+fileExtensionPreference:
+    .tex: 1
+    .sty: 2
+    .cls: 3
+    .bib: 4
+	\end{cmhlistings}
+	Calling \lstinline!latexindent.pl myfile! with the details specified in \cref{lst:fileExtensionPreference}
+	means that the script will first look for \lstinline!myfile.tex!, then \lstinline!myfile.sty!, \lstinline!myfile.cls!, 
+    and finally \lstinline!myfile.bib! in order.
+\item[\verbitem{logFilePreferences}] 
+  \lstinline!latexindent.pl! writes information to \lstinline!indent.log!, some 
+  of which can be customised by changing \lstinline!logFilePreferences!; see \cref{lst:logFilePreferences}.
+\begin{cmhlistings}[style=yaml]{\lstinline!logFilePreferences!}{lst:logFilePreferences}
+logFilePreferences:
+    showEveryYamlRead: 1
+    showAlmagamatedSettings: 0
+    endLogFileWith: '--------------' 
+    traceModeIncreaseIndent: '>>'
+    traceModeAddCurrentIndent: '||'
+    traceModeDecreaseIndent: '<<'
+    traceModeBetweenLines: "\n"
+  \end{cmhlistings}
+If you load your own user settings (see \vref{sec:indentconfig}) then \lstinline!latexindent.pl! will
+detail them in \lstinline!indent.log!; you can choose not to have the details logged by switching
+\lstinline!showEveryYamlRead! to \lstinline!0!. Once all of your settings have 
+been loaded, you can see the amalgamated settings by switching \lstinline!showAlmagamatedSettings! 
+to \lstinline!1!, if you wish. The log file will end with the characters 
+given in \lstinline!endLogFileWith!.
+
+When \lstinline!trace! mode is active (see \cpageref{page:traceswitch}) verbose information is written 
+to \lstinline!indent.log!. The decoration of this information can be customised through the remaining
+fields given in \cref{lst:logFilePreferences}; note, in particular, the use of \lstinline!"\n"! for 
+escaped characters (using single quotes will not produce the same results).
+
+\item[\verbitem{fileContentsEnvironments}] 
+  \lstinline!latexindent.pl! determines when the main document begins by looking for \lstinline!\begin{document}!; 
+  it will not do so when inside any of the environments specified in \lstinline!fileContentsEnvironments!, see
+  \cref{lst:fileContentsEnvironments}.
+\begin{cmhlistings}[style=yaml]{\lstinline!fileContentsEnvironments!}{lst:fileContentsEnvironments}
+fileContentsEnvironments:
+    filecontents: 1
+    filecontents*: 1
+  \end{cmhlistings}
+
+	\begin{warning}
+		\emph{The following fields are marked in red, as they are not necessary
+			unless you wish to micro-manage your indentation scheme.
+			Note that in each case, you should \emph{not} use the backslash.}
+	\end{warning}
+
+	% to anyone reading the source code- I know the next line isn't the
+	% correct way to do it :)
+	\item[\color{red}\verbitem{checkunmatched}] Assuming you keep \lstinline!alwaysLookforSplitBraces! set to \lstinline!1! (which
+	      is the default) then you don't need to worry about \lstinline!checkunmatched!.
+
+	      Should you wish to deactivate \lstinline!alwaysLookforSplitBraces! by setting it to \lstinline!0!, then
+	      you can populate \lstinline!checkunmatched! with commands that can split braces across
+	      lines--see \cref{lst:checkunmatched}.
+
+	      \begin{cmhlistings}[style=yaml]{\lstinline!checkunmatched!}{lst:checkunmatched}
+checkunmatched:
+    parbox: 1
+    vbox: 1
+	\end{cmhlistings}
+	\item[\color{red}\verbitem{checkunmatchedELSE}] Similarly, assuming you keep \lstinline!alwaysLookforSplitBraces! set to \lstinline!1! (which
+	      is the default) then you don't need to worry about \lstinline!checkunmatchedELSE!.
+
+	      As in \lstinline!checkunmatched!, should you wish to deactivate \lstinline!alwaysLookforSplitBraces! by setting it to \lstinline!0!, then
+	      you can populate \lstinline!checkunmatchedELSE! with commands that can split braces across
+	      lines \emph{and} have an `else' statement--see \cref{lst:checkunmatchedELSE}.
+
+	      \begin{cmhlistings}[style=yaml]{\lstinline!checkunmatchedELSE!}{lst:checkunmatchedELSE}
+checkunmatchedELSE:
+    pgfkeysifdefined: 1
+    DTLforeach: 1
+    ifthenelse: 1
+	\end{cmhlistings}
+	\item[\color{red}\verbitem{checkunmatchedbracket}] Assuming you keep \lstinline!alwaysLookforSplitBrackets!
+	      set to \lstinline!1! (which is the default) then you don't need to worry about \lstinline!checkunmatchedbracket!.
+
+	      Should you wish to deactivate \lstinline!alwaysLookforSplitBrackets! by setting it
+	      to \lstinline!0!, then you can populate \lstinline!checkunmatchedbracket! with commands that can
+	      split \emph{brackets} across lines--see \cref{lst:checkunmatchedbracket}.
+
+	      \begin{cmhlistings}[style=yaml]{\lstinline!checkunmatchedbracket!}{lst:checkunmatchedbracket}
+checkunmatchedbracket:
+    psSolid: 1
+    pgfplotstablecreatecol: 1
+    pgfplotstablesave: 1
+    pgfplotstabletypeset: 1
+    mycommand: 1
+	\end{cmhlistings}
+\end{itemize}
+
+\subsubsection{Hierarchy of fields}\label{sec:fieldhierachy}
+After reading the previous section, it should sound reasonable that
+\lstinline!noAdditionalIndent!, \lstinline!indentRules!, and
+\lstinline!verbatim! all serve mutually exclusive tasks. Naturally, you may
+well wonder what happens if you choose to ask \lstinline!latexindent.pl! to
+prioritize one above the other.
+
+For example, let's say that (after reading \cref{sec:indentconfig}) you put the fields in \cref{lst:conflict} into
+one of your settings files.
+\begin{cmhlistings}[style=yaml]{Conflicting ideas}{lst:conflict}
+indentRules:
+   myenvironment: "\t\t"
+noAdditionalIndent:
+   myenvironment: 1
+\end{cmhlistings}
+
+Clearly these fields conflict: first of all
+you are telling \lstinline!latexindent.pl! that \lstinline!myenvironment! should
+receive two tabs of indentation, and then you are telling it
+not to put any indentation in the environment. \lstinline!latexindent.pl!
+will always make the decision to prioritize \lstinline!noAdditionalIndent! above
+\lstinline!indentRules! regardless of the order that you load them in
+your settings file. The first
+time it encounters \lstinline!myenvironment! it will put a warning in \lstinline!indent.log!
+and delete the offending key from \lstinline!indentRules! so that any future
+conflicts will not have to be addressed.
+
+Let's consider another conflicting example in \cref{lst:bigconflict}
+\begin{cmhlistings}[style=yaml]{More conflicting ideas}{lst:bigconflict}
+lookForAlignDelims:
+   myenvironment: 1
+verbatimEnvironments:
+   myenvironment: 1
+\end{cmhlistings}
+This is quite a significant conflict--we are first of all telling \lstinline!latexindent.pl!
+to look for alignment delimiters in \lstinline!myenvironment! and then
+telling it that actually we would like \lstinline!myenvironment! to be considered
+as a \lstinline!verbatim!-like environment. Regardless of the order that we
+state \cref{lst:bigconflict} the \lstinline!verbatim! instruction will always win.
+As in \cref{lst:conflict} you will only receive a warning in \lstinline!indent.log! the
+first time \lstinline!latexindent.pl! encounters \lstinline!myenvironment! as the
+offending key is deleted from \lstinline!lookForAlignDelims!.
+
+To summarize, \lstinline!latexindent.pl! will prioritize the various fields in the
+following order:
+\begin{enumerate}
+	\item \lstinline!verbatimEnvironments!
+	\item \lstinline!noAdditionalIndent!
+	\item \lstinline!indentRules!
+\end{enumerate}
+\subsection{\lstinline!indentconfig.yaml! and \lstinline!.indentconfig.yaml! (for user settings)}\label{sec:indentconfig}
+Editing \lstinline!defaultSettings.yaml! is not ideal as it may be overwritten when
+updating your distribution--a better way to customize the settings to your liking
+is to set up your own settings file,
+\lstinline!mysettings.yaml! (or any name you like, provided it ends with \lstinline!.yaml!).
+The only thing you have to do is tell \lstinline!latexindent.pl! where to find it.
+
+\lstinline!latexindent.pl! will always check your home directory for \lstinline!indentconfig.yaml!
+and  \lstinline!.indentconfig.yaml! (unless
+it is called with the \lstinline!-d! switch),
+which is a plain text file you can create that contains the \emph{absolute}
+paths for any settings files that you wish \lstinline!latexindent.pl! to load. There is no difference
+between \lstinline!indentconfig.yaml! and \lstinline!.indentconfig.yaml!, other than the
+fact that \lstinline!.indentconfig.yaml! is a `hidden' file; thank you to \cite{jacobo-diaz-hidden-config}
+for providing this feature. In what follows, we will use \lstinline!indentconfig.yaml!, but it
+is understood that this equally represents \lstinline!.indentconfig.yaml! as well. If you
+have both files in existence,  \lstinline!indentconfig.yaml! takes priority.
+
+For Mac and Linux users, their home directory is \lstinline!~/username! while
+Windows (Vista onwards) is \lstinline!C:\Users\username! \footnote{If you're not sure
+	where to put \lstinline!indentconfig.yaml!, don't
+	worry \lstinline!latexindent.pl! will tell you in the log file exactly where to
+put it assuming it doesn't exist already.}
+\Cref{lst:indentconfig} shows a sample \lstinline!indentconfig.yaml! file.
+
+\begin{cmhlistings}[style=yaml]{\lstinline!indentconfig.yaml! (sample)}{lst:indentconfig}
+# Paths to user settings for latexindent.pl
+#
+# Note that the settings will be read in the order you
+# specify here- each successive settings file will overwrite
+# the variables that you specify
+
+paths:
+- /home/cmhughes/Documents/yamlfiles/mysettings.yaml
+- /home/cmhughes/folder/othersettings.yaml
+- /some/other/folder/anynameyouwant.yaml
+- C:\Users\chughes\Documents\mysettings.yaml
+- C:\Users\chughes\Desktop\test spaces\more spaces.yaml
+\end{cmhlistings}
+
+Note that the \lstinline!.yaml! files you specify in \lstinline!indentconfig.yaml!
+will be loaded in the order that you write them in. Each file doesn't have
+to have every switch from \lstinline!defaultSettings.yaml!; in fact, I recommend
+that you only keep the switches that you want to \emph{change} in these
+settings files.
+
+To get started with your own settings file, you might like to save a copy of
+\lstinline!defaultSettings.yaml! in another directory and call it, for
+example, \lstinline!mysettings.yaml!. Once you have added the path to \lstinline!indentconfig.yaml!
+feel free to start changing the switches and adding more environments to it
+as you see fit--have a look at \cref{lst:mysettings} for an example
+that uses four tabs for the default indent, adds the \lstinline!tabbing!
+environment to the list of environments that contains alignment delimiters,
+and adds the changes we described on \cpageref{page:examsettings}.
+
+\begin{cmhlistings}[style=yaml]{\lstinline!mysettings.yaml! (example)}{lst:mysettings}
+# Default value of indentation
+defaultIndent: "\t\t\t\t"
+
+# environments that have tab delimiters, add more
+# as needed
+lookForAlignDelims:
+   tabbing: 1
+
+# If you use the exam documentclass, you might 
+# like the following settings
+# environments that have \item commands
+indentAfterItems:
+    parts: 1
+
+# commands to be treated like \item
+itemNames:
+    part: 1
+\end{cmhlistings}
+
+You can make sure that your settings are loaded by checking \lstinline!indent.log!
+for details--if you have specified a path that \lstinline!latexindent.pl! doesn't
+recognize then you'll get a warning, otherwise you'll get confirmation that
+\lstinline!latexindent.pl! has read your settings file \footnote{Windows users
+	may find that they have to end \lstinline!.yaml! files with a blank line}.
+
+\begin{warning}
+	When editing \lstinline!.yaml! files it is \emph{extremely} important
+	to remember how sensitive they are to spaces. I highly recommend copying
+	and pasting from \lstinline!defaultSettings.yaml! when you create your
+	first \lstinline!whatevernameyoulike.yaml! file.
+
+	If \lstinline!latexindent.pl! can not read your \lstinline!.yaml! file it
+	will tell you so in \lstinline!indent.log!.
+\end{warning}
+
+\subsection{\lstinline!localSettings.yaml!}\label{sec:localsettings}
+You may remember on \cpageref{page:localswitch} we discussed the \lstinline!-l! switch
+that tells \lstinline!latexindent.pl! to look for \lstinline!localSettings.yaml! in the
+\emph{same directory} as \lstinline!myfile.tex!. This settings file will
+be read \emph{after} \lstinline!defaultSettings.yaml! and, assuming they exist,
+user settings.
+
+The \emph{local} settings file may be called \lstinline!localSettings.yaml!, and
+it can contain any switches that you'd
+like to change--a sample is shown in \cref{lst:localSettings}.
+
+\begin{cmhlistings}[style=yaml]{\lstinline!localSettings.yaml! (example)}{lst:localSettings}
+# Default value of indentation
+defaultIndent: " "
+
+# environments that have tab delimiters, add more
+# as needed
+lookForAlignDelims:
+   tabbing: 0
+
+#  verbatim environments- environments specified
+#  in this hash table will not be changed at all!
+verbatimEnvironments:
+    cmhenvironment: 0
+\end{cmhlistings}
+
+You can make sure that your local settings are loaded by checking \lstinline!indent.log!
+for details--if \lstinline!localSettings.yaml! can not be read then you will
+get a warning, otherwise you'll get confirmation that
+\lstinline!latexindent.pl! has read \lstinline!localSettings.yaml!.
+
+If you'd prefer to name your \lstinline!localSettings.yaml! file something different, (say, \lstinline!myyaml.yaml!) then
+you can call \lstinline!latexindent.pl! using, for example, \lstinline[breaklines=true]!latexindent.pl -l=myyaml.yaml myfile.tex!.
+
+\subsection{Settings load order}\label{sec:loadorder}
+\lstinline!latexindent.pl! loads the settings files in the following order:
+\begin{enumerate}
+	\item \lstinline!defaultSettings.yaml! is always loaded, and can not be renamed;
+	\item \lstinline!anyUserSettings.yaml! and any other arbitrarily-named files specified in \lstinline!indentconfig.yaml!;
+	\item \lstinline!localSettings.yaml! but only if found in the same directory as \lstinline!myfile.tex! and called
+	      with \lstinline!-l! switch; this file can be renamed, provided that the call to \lstinline!latexindent.pl! is adjusted 
+          accordingly (see \cref{sec:localsettings}).
+\end{enumerate}
+A visual representation of this is given in \cref{fig:loadorder}.
+
+\begin{figure}
+	\centering
+	\begin{tikzpicture}[
+			needed/.style={very thick, draw=blue,fill=blue!20,
+				text centered, minimum height=2.5em,rounded corners=1ex},
+			optional/.style={draw=black, very thick,scale=0.8,
+				text centered, minimum height=2.5em,rounded corners=1ex},
+			optionalfill/.style={fill=black!10},
+			connections/.style={draw=black!30,dotted,line width=3pt,text=red},
+		]
+		% Draw diagram elements
+		\node (latexindent) [needed,circle]  {\lstinline!latexindent.pl!};
+		\node (default) [needed,above right=.5cm of latexindent]  {\lstinline!defaultSettings.yaml!};
+		\node (indentconfig) [optional,right=of latexindent]  {\lstinline!indentconfig.yaml!};
+		\node (any) [optional,optionalfill,above right=of indentconfig]  {\lstinline!any.yaml!};
+		\node (name) [optional,optionalfill,right=of indentconfig]  {\lstinline!name.yaml!};
+		\node (you) [optional,optionalfill,below right=of indentconfig]  {\lstinline!you.yaml!};
+		\node (want) [optional,optionalfill,below=of indentconfig]  {\lstinline!want.yaml!};
+		\node (local) [optional,below=of latexindent]  {\lstinline!localSettings.yaml!};
+		% Draw arrows between elements
+		\draw[connections,solid] (latexindent) to[in=-90]node[pos=0.5,anchor=north]{1} (default.south) ;
+		\draw[connections,optional] (latexindent) -- node[pos=0.5,anchor=north]{2} (indentconfig) ;
+		\draw[connections,optional] (indentconfig) to[in=-90] (any.south) ;
+		\draw[connections,optional] (indentconfig) -- (name) ;
+		\draw[connections,optional] (indentconfig) to[out=-45,in=90] (you) ;
+		\draw[connections,optional] (indentconfig) -- (want) ;
+		\draw[connections,optional] (latexindent) -- node[pos=0.5,anchor=west]{3} (local) ;
+	\end{tikzpicture}
+	\caption{Schematic of the load order described in \cref{sec:loadorder}; solid lines represent
+		mandatory files, dotted lines represent optional files. \lstinline!indentconfig.yaml! can
+		contain as many files as you like--the files will be loaded in order; if you specify
+	settings for the same field in more than one file, the most recent takes priority. }
+	\label{fig:loadorder}
+\end{figure}
+
+\subsection{An important example}
+I was working on a document that had the text shown in \cref{lst:casestudy}.
+\begin{cmhlistings}[style=demo,escapeinside={(*@}{@*)}]{When to set \lstinline!alwaysLookforSplitBrackets=0!}{lst:casestudy}
+Hence determine how many zeros the function $h(x)=f(x)-g(x)$
+has on the interval $[0,9)$.(*@\label{line:interval1}@*)
+\begin{shortsolution}
+	The function $h$ has $10$ zeros on the interval $[0,9)$.(*@\label{line:interval2}@*)
+\end{shortsolution}
+\end{cmhlistings}
+I had allowed \lstinline!alwaysLookforSplitBrackets=1!, which is the default setting.
+Unfortunately, this caused undesired results, as \lstinline!latexindent.pl! thought that the opening
+\lstinline![!  in the interval notation (\cref{line:interval1,line:interval2})
+was an opening brace that needed to be closed (with a corresponding \lstinline!]!). Clearly
+this was inappropriate, but also expected since \lstinline!latexindent.pl! was simply
+following its matching rules.
+
+In this particular instance, I set up \lstinline!localSettings.yaml!
+to contain \lstinline!alwaysLookforSplitBrackets: 0! and then specified the commands
+that could split brackets across lines (such as \lstinline!begin{axis}!) individually
+in \lstinline!checkunmatchedbracket!.  Another option would have been to wrap the
+the line in an environment from \lstinline!noIndentBlock! which treats its contents
+as a verbatim environment.
+
+
+\section{Known limitations}\label{sec:knownlimitations}
+There are a number of known limitations of the script, and almost certainly quite a
+few that are \emph{unknown}!
+
+The main limitation is to do with the alignment routine of environments that contain
+delimiters--in other words, environments that are entered in \lstinline!lookForAlignDelims!.
+Indeed, this is the only part of the script that can \emph{potentially} remove
+lines from \lstinline!myfile.tex!. Note that \lstinline!indent.log! will always
+finish with a comparison of line counts before and after.
+
+The routine works well for `standard' blocks of code that have the same number of \lstinline!&!
+per line, but it will not do anything for lines that do not--such examples
+include \lstinline!tabular! environments that use \lstinline!\multicolumn! or
+perhaps spread cell contents across multiple lines.  For each alignment block (\lstinline!tabular!,
+\lstinline!align!, etc) \lstinline!latexindent.pl! first of all makes a record
+of the maximum number of \lstinline!&!; if each row does not have that
+number of \lstinline!&! then it will not try to format that row. Details
+will be given in \lstinline!indent.log! assuming that \lstinline!trace! mode
+is active.
+
+If you have a \lstinline!verbatim!-like environment inside a \lstinline!tabular!-like
+environment, the \lstinline!verbatim! environment \emph{will} be formatted, which
+is probably not what you want. I hope to address this in future versions, but for the
+moment wrap it in a \lstinline!noIndentBlock! (see \cpageref{lst:noIndentBlockdemo}).
+
+You can run \lstinline!latexindent! on \lstinline!.sty!, \lstinline!.cls! and any filetypes
+that you specify in \lstinline[breaklines=true]!fileExtensionPreference! (see \vref{lst:fileExtensionPreference}); 
+if you find a case in which the script struggles, please feel free
+to report it at \cite{latexindent-home}, and
+in the meantime, consider using a \lstinline!noIndentBlock! (see \cpageref{lst:noIndentBlockdemo}).
+
+I hope that this script is useful to some; if you find an example where the
+script does not behave as you think it should, the best way to contact me is to
+report an issue on \cite{latexindent-home}; otherwise, feel free to find me on 
+the \url{http://tex.stackexchange.com} site; I'm often around
+and in the chat room.
+
+\nocite{*}
+\section{References}
+\printbibliography[heading=subbibnumbered,title={External links},notkeyword=contributor]
+\printbibliography[env=specialbib,heading=subbibnumbered,title={Contributors\label{sec:contributors}},keyword=contributor]
+
+\appendix
+\section{Required \lstinline!Perl! modules}\label{sec:requiredmodules}
+If you intend to use \lstinline!latexindent.pl! and \emph{not} one of the supplied standalone executable files, then you will need a few standard Perl modules--if you can run the
+minimum code in \cref{lst:helloworld} (\lstinline!perl helloworld.pl!) then you will be able to run \lstinline!latexindent.pl!, otherwise you may
+need to install the missing modules.
+
+\begin{cmhlistings}[language=Perl]{\lstinline!helloworld.pl!}{lst:helloworld}
+#!/usr/bin/perl
+
+use strict;
+use warnings;
+use FindBin;
+use YAML::Tiny;
+use File::Copy;
+use File::Basename;
+use Getopt::Long;
+use File::HomeDir;
+
+print "hello world";
+exit;
+\end{cmhlistings}
+My default installation on Ubuntu 12.04 did \emph{not} come
+with all of these modules as standard, but Strawberry Perl for Windows \cite{strawberryperl}
+did.
+
+Installing the modules given in \cref{lst:helloworld} will vary depending on your
+operating system and \lstinline!Perl! distribution. For example, Ubuntu users
+might visit the software center, or else run
+\begin{lstlisting}[numbers=none]
+sudo perl -MCPAN -e 'install "File::HomeDir"'
+\end{lstlisting}
+
+Linux users may be interested in exploring Perlbrew \cite{perlbrew}; possible installation and setup 
+options follow for Ubuntu (other distributions will need slightly different commands).
+\begin{lstlisting}[numbers=none]
+sudo apt-get install perlbrew
+perlbrew install perl-5.20.1
+perlbrew switch perl-5.20.1
+sudo apt-get install curl
+curl -L http://cpanmin.us | perl - App::cpanminus
+cpanm YAML::Tiny
+cpanm File::HomeDir
+\end{lstlisting}
+
+Strawberry Perl users on Windows might use
+\lstinline!CPAN client!. All of the modules are readily available on CPAN \cite{cpan}.
+
+As of Version 2.1,  \lstinline!indent.log! will contain details of the location
+of the Perl modules on your system.  \lstinline!latexindent.exe! is a standalone
+executable for Windows (and therefore does not require a Perl distribution) and caches copies of the Perl modules onto your system; if you
+wish to see where they are cached, use the  \lstinline!trace! option, e.g  \lstinline!latexindent.exe -t myfile.tex!.
+
+\section{The \lstinline!arara! rule}
+The \lstinline!arara! rule (\lstinline!indent.yaml!) contains lines such as those
+given in \cref{lst:arararule}. With this setup, the user \emph{always} has
+to specify whether or not they want (in this example) to use the \lstinline!trace!
+identifier.
+\begin{cmhlistings}[style=yaml,numbers=none]{The \lstinline!arara! rule}{lst:arararule}
+...
+arguments:
+- identifier: trace
+  flag: <arara> @{ isTrue( parameters.trace, "-t" ) }
+...
+\end{cmhlistings}
+
+If you would like to have the \lstinline!trace! option on by default every time you
+call \lstinline!latexindent.pl! from \lstinline!arara! (without having to write \lstinline!% arara: indent: {trace: yes}!), then simply
+amend \cref{lst:arararule} so that it looks like \cref{lst:arararulemod}.
+\begin{cmhlistings}[style=yaml,numbers=none]{The \lstinline!arara! rule (modified)}{lst:arararulemod}
+...
+arguments:
+- identifier: trace
+  flag: <arara> @{ isTrue( parameters.trace, "-t" ) }
+  default: "-t"
+...
+\end{cmhlistings}
+
+With this modification in place, you now simply to write \lstinline!% arara: indent! and
+\lstinline!trace! mode will be activated by default. If you wish to turn off \lstinline!trace!
+mode then you can write \lstinline!% arara: indent: {trace: off}!.
+
+Of course, you can apply these types of modifications to \emph{any} of the identifiers,
+but proceed with caution if you intend to do this for \lstinline!overwrite!.
+
+\section{Updating the \lstinline!path! variable}\label{sec:updating-path}
+\lstinline!latexindent.pl! ships with a few scripts that can update the \lstinline!path! variables
+\footnote{Thanks to \cite{jasjuang} for this feature!}. If you're
+on a Linux or Mac machine, then you'll want \lstinline!CMakeLists.txt! from \cite{latexindent-home}.
+\subsection{Add to path for Linux}
+To add \lstinline!latexindent.pl! to the path for Linux, follow these steps:
+\begin{enumerate}
+	\item download  \lstinline!latexindent.pl!, \lstinline!defaultSettings.yaml!,  to your
+      chosen directory from \cite{latexindent-home} ; 
+    \item within your directory, create a directory called \lstinline!path-helper-files! and 
+      download \lstinline!CMakeLists.txt! and \lstinline!cmake_uninstall.cmake.in!
+	      from \cite{latexindent-home}/path-helper-files to this directory;
+	\item run \lstinline!ls /usr/local/bin! to see what is \emph{currently} in there;
+	\item run the commands given in \cref{linux-add-to-path};
+	\item run \lstinline!ls /usr/local/bin! again to check that \lstinline!latexindent.pl! and \lstinline!defaultSettings.yaml!
+	      have been added.
+\end{enumerate}
+\begin{cmhlistings}[style=yaml,numbers=none]{Add to path from a Linux terminal}{linux-add-to-path}
+sudo apt-get install cmake
+sudo apt-get update && sudo apt-get install build-essential
+mkdir build && cd build
+cmake ../path-helper-files
+sudo make install
+\end{cmhlistings}
+To \emph{remove} the files, run \lstinline!sudo make uninstall!.
+\subsection{Add to path for Windows}
+To add \lstinline!latexindent.exe! to the path for Windows, follow these steps:
+\begin{enumerate}
+	\item download  \lstinline!latexindent.exe!, \lstinline!defaultSettings.yaml!,  \lstinline!add-to-path.bat!
+	      from \cite{latexindent-home} to your chosen directory;
+	\item open a command prompt and run \lstinline!echo %path%! to see what is \emph{currently} in your \lstinline!%path%! variable;
+	\item right click on \lstinline!add-to-path.bat! and \emph{Run as administrator};
+	\item log out, and log back in;
+	\item open a command prompt and run \lstinline!echo %path%! to check that the appropriate directory has been added to your
+	      \lstinline!%path%!.
+\end{enumerate}
+To \emph{remove} the directory from your \lstinline!%path%!, run \lstinline!remove-from-path.bat! as administrator.
+\end{document}


Property changes on: trunk/Master/texmf-dist/doc/support/latexindent/documentation/latexindent.tex
___________________________________________________________________
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Deleted: trunk/Master/texmf-dist/doc/support/latexindent/documentation/manual.pdf
===================================================================
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Deleted: trunk/Master/texmf-dist/doc/support/latexindent/documentation/manual.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/documentation/manual.tex	2016-10-27 01:16:43 UTC (rev 42365)
+++ trunk/Master/texmf-dist/doc/support/latexindent/documentation/manual.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -1,1247 +0,0 @@
-% arara: pdflatex
-% !arara: bibtex
-% !arara: pdflatex
-% !arara: pdflatex
-% !arara: pdflatex
-% !arara: indent: {overwrite: no, trace: yes, localSettings: yes, silent: yes}
-% http://tex.stackexchange.com/questions/122135/how-to-add-a-png-icon-on-the-right-side-of-a-tcolorbox-title
-\begin{filecontents}{mybib.bib}
-	@online{cmh:videodemo,
-		title="Video demonstration of latexindet.pl on youtube",
-		url="http://www.youtube.com/watch?v=s_AMmNVg5WM"}
-	@online{cpan,
-		title="CPAN: Comprehensive Perl Archive Network",
-		url="http://www.cpan.org/"}
-	@online{strawberryperl,
-		title="Strawberry Perl",
-		url="http://strawberryperl.com/"}
-	@online{cmhblog,
-		title="A Perl script for indenting tex files",
-		url="http://tex.blogoverflow.com/2012/08/a-perl-script-for-indenting-tex-files/"}
-\end{filecontents}
-\documentclass[11pt]{article}
-%   This program is free software: you can redistribute it and/or modify
-%   it under the terms of the GNU General Public License as published by
-%   the Free Software Foundation, either version 3 of the License, or
-%   (at your option) any later version.
-%
-%   This program is distributed in the hope that it will be useful,
-%   but WITHOUT ANY WARRANTY; without even the implied warranty of
-%   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-%   GNU General Public License for more details.
-%
-%   See <http://www.gnu.org/licenses/>.
-\usepackage[left=4.5cm,right=2.5cm,showframe=false,
-top=2cm,bottom=1.5cm]{geometry}                      % page setup
-\usepackage{parskip}                                 % paragraph skips
-\usepackage{booktabs}                                % beautiful tables
-\usepackage{listings}                                % nice verbatim environments
-\usepackage{titlesec}                                % customize headings
-\usepackage{changepage}                              % adjust width of page
-\usepackage{fancyhdr}                                % headers & footers
-\usepackage[sc,format=hang,font=small]{caption}      % captions
-\usepackage[backend=bibtex]{biblatex}                % bibliography
-\usepackage{tcolorbox}                                % framed environments
-\usepackage[charter]{mathdesign}                     % changes font
-\usepackage[expansion=false,kerning=true]{microtype} % better kerning
-\usepackage{enumitem}                                % custom lists
-\usepackage{tikz}                                    % so so much
-\usepackage{tcolorbox}
-% tcolorbox libraries
-\tcbuselibrary{breakable,skins,listings}
-\usetikzlibrary{positioning}
-\usepackage{varioref}                                % clever referencing
-\usepackage[colorlinks=true,linkcolor=blue,citecolor=black]{hyperref}
-\usepackage{cleveref}
-
-\addbibresource{mybib}
-
-%\newmdenv[linecolor=red,innertopmargin=.5cm,linewidth=3pt,
-%	splittopskip=\topskip,skipbelow=0pt,%
-%]{warning}
-
-
-\newtcolorbox{warning}{parbox=false,breakable,enhanced,arc=0mm,colback=red!5,colframe=red,leftrule=12mm,%
-	overlay={\node[anchor=north west,outer sep=2pt] at (frame.north west) {\includegraphics[width=8mm]{warning}}; }}
-
-\makeatletter
-\tcbset{
-	addtolol/.style={list entry={\kvtcb at title},add to list={lol}{lstlisting}},
-}
-
-\newtcblisting[use counter=lstlisting]{cmhlistings}[3][]{%
-	width=\linewidth,
-	breakable,
-	colback=blue!5!white,
-	colframe=white!85!black,
-	top=0cm,
-	bottom=0cm,
-	left=6mm,
-	listing only,
-	listing options={#1},
-	center title,
-	title={\color{black}{\scshape Listing \thetcbcounter}: ~#2},label={#3},
-	addtolol,
-}
-
-\lstset{%
-	basicstyle=\small\ttfamily,language={[LaTeX]TeX},
-	%	numbers=left,
-	numberstyle=\ttfamily%\small,
-	breaklines=true,
-	%   frame=single,framexleftmargin=8mm, xleftmargin=8mm,
-	%	prebreak = \raisebox{0ex}[0ex][0ex]{\ensuremath{\hookrightarrow}},
-	%	backgroundcolor=\color{green!5},frameround=fttt,
-	%	rulecolor=\color{blue!70!black},
-	keywordstyle=\color{blue},                    % keywords
-	commentstyle=\color{purple},    % comments
-	tabsize=3,
-	%xleftmargin=1.5em,
-}%
-\lstdefinestyle{yaml}{%
-	numbers=left,
-	numberstyle=\color{black},}
-\lstdefinestyle{demo}{
-	numbers=none,
-	linewidth=1.25\textwidth,
-	columns=fullflexible,
-}
-\newcommand{\verbitem}[1]{\small\ttfamily{#1}}
-% stolen from arara.sty http://mirrors.med.harvard.edu/ctan/support/arara/doc/arara.sty
-%\lstnewenvironment{yaml}[1][]{\lstset{%
-%	basicstyle=\ttfamily,
-%	numbers=left,
-%	xleftmargin=1.5em,
-%	breaklines=true,
-%	numberstyle=\ttfamily\small,
-%	columns=flexible,
-%	mathescape=false,
-%	#1,
-%}}
-%{}
-
-\newcommand{\fixthis}[1]
-{%
-	\marginpar{\huge \color{red} \framebox{FIX}}%
-	\typeout{FIXTHIS: p\thepage : #1^^J}%
-}
-% custom section
-\titleformat{\section}
-{\normalfont\Large\bfseries}
-{\llap{\thesection\hskip.5cm}}
-{0pt}
-{}
-% custom subsection
-\titleformat{\subsection}
-{\normalfont\bfseries}
-{\llap{\thesubsection\hskip.5cm}}
-{0pt}
-{}
-% custom subsubsection
-\titleformat{\subsubsection}
-{\normalfont\bfseries}
-{\llap{\thesubsubsection\hskip.5cm}}
-{0pt}
-{}
-
-
-\titlespacing\section{0pt}{12pt plus 4pt minus 2pt}{-5pt plus 2pt minus 2pt}
-\titlespacing\subsection{0pt}{12pt plus 4pt minus 2pt}{-6pt plus 2pt minus 2pt}
-\titlespacing\subsubsection{0pt}{12pt plus 4pt minus 2pt}{-6pt plus 2pt minus 2pt}
-
-
-% cleveref settings
-\crefname{table}{Table}{Tables}
-\Crefname{table}{Table}{Tables}
-\crefname{figure}{Figure}{Figures}
-\Crefname{figure}{Figure}{Figures}
-\crefname{section}{Section}{Sections}
-\Crefname{section}{Section}{Sections}
-\crefname{listing}{Listing}{Listings}
-\Crefname{listing}{Listing}{Listings}
-
-\begin{document}
-
-% \begin{noindent}
-	\title{\lstinline[basicstyle=\huge\ttfamily]!latexindent.pl!\\[1cm]
-		Version 2.1R}
-% \end{noindent}
-\author{Chris Hughes \footnote{smr01cmh AT users.sourceforge.net}}
-\maketitle
-\begin{abstract}
-	\lstinline!latexindent.pl! is a \lstinline!Perl! script that indents \lstinline!.tex!
-	files according to an indentation scheme that the user can modify to suit their
-	taste. Environments, including those with alignment delimiters (such as \lstinline!tabular!),
-	and commands, including those that can split braces and brackets across lines,
-	are \emph{usually} handled correctly by the script. Options for \lstinline!verbatim!-like
-	environments and indentation after headings (such as \lstinline!\chapter!, \lstinline!\section!, etc)
-	are also available.
-\end{abstract}
-
-\tableofcontents
-\lstlistoflistings
-
-\section{Before we begin}
-\subsection{Thanks}
-I first created \lstinline!latexindent.pl! to help me format chapter files
-in a big project. After I blogged about it on the
-\TeX{} stack exchange \cite{cmhblog} I received some positive feedback and
-follow-up feature requests. A big thank you to Harish Kumar who has really
-helped to drive the script forward and has put it through a number of challenging
-tests--I look forward to more challenges in the future Harish!
-
-The \lstinline!yaml!-based interface of \lstinline!latexindent.pl! was inspired
-by the wonderful \lstinline!arara! tool; any similarities are deliberate, and
-I hope that it is perceived as the compliment that it is. Thank you to Paulo Cereda and the
-team for releasing this awesome tool; I initially worried that I was going to
-have to make a GUI for \lstinline!latexindent.pl!, but the release of \lstinline!arara!
-has meant there is no need. Thank you to Paulo for all of your advice and
-encouragement.
-
-\subsection{License}
-\lstinline!latexindent.pl! is free and open source, and it always will be.
-Before you start using it on any important files, bear in mind that \lstinline!latexindent.pl! has the option to overwrite your \lstinline!.tex! files.
-It will always make at least one backup (you can choose how many it makes, see \cpageref{page:onlyonebackup})
-but you should still be careful when using it. The script has been tested on many
-files, but there are some known limitations (see \cref{sec:knownlimitations}).
-You, the user, are responsible for ensuring that you maintain backups of your files
-before running \lstinline!latexindent.pl! on them. I think it is important at this
-stage to restate an important part of the license here:
-\begin{quote}\itshape
-	This program is distributed in the hope that it will be useful,
-	but WITHOUT ANY WARRANTY; without even the implied warranty of
-	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-	GNU General Public License for more details.
-\end{quote}
-There is certainly no malicious intent in releasing this script, and I do hope
-that it works as you expect it to--if it does not, please first of all
-make sure that you have the correct settings, and then feel free to let me know with a
-complete minimum working example as I would like to improve the code as much as possible.
-
-\begin{warning}
-	Before you try the script on anything important (like your thesis), test it
-	out on the sample files that come with it in the \lstinline!success! directory.
-\end{warning}
-
-
-\section{Demonstration: before and after}
-Let's give a demonstration of some before and after code--after all, you probably
-won't want to try the script if you don't much like the results. You might also
-like to watch the video demonstration I made on youtube \cite{cmh:videodemo}
-
-As you look at \crefrange{lst:filecontentsbefore}{lst:pstricksafter}, remember
-that \lstinline!latexindent.pl! is just following its rules--there is nothing
-particular about these code snippets. All of the rules can be modified
-so that each user can personalize their indentation scheme.
-
-In each of the samples given in \crefrange{lst:filecontentsbefore}{lst:pstricksafter}
-the `before' case is a `worst case scenario' with no effort to make indentation. The `after'
-result would be the same, regardless of the leading white space at the beginning of
-each line which is stripped by \lstinline!latexindent.pl! (unless a \lstinline!verbatim!-like
-environment or \lstinline!noIndentBlock! is specified--more on this in \cref{sec:defuseloc}).
-
-\begin{adjustwidth}{-2cm}{2cm}
-    \noindent
-	\begin{minipage}{.6\textwidth}
-		\begin{cmhlistings}[style=demo]{\lstinline!filecontents! before}{lst:filecontentsbefore}
-\begin{filecontents}{mybib.bib}
- at online{strawberryperl,
-title="Strawberry Perl",
-url="http://strawberryperl.com/"}
- at online{cmhblog,
-title="A Perl script ...
-url="...
-\end{filecontents}
-		\end{cmhlistings}
-	\end{minipage}%
-    \noindent
-	\begin{minipage}{.6\textwidth}
-		\begin{cmhlistings}[style=demo]{\lstinline!filecontents! after}{lst:filecontentsafter}
-\begin{filecontents}{mybib.bib}
-	@online{strawberryperl,
-		title="Strawberry Perl",
-		url="http://strawberryperl.com/"}
-	@online{cmhblog,
-		title="A Perl script for ...
-		url="...
-\end{filecontents}
-		\end{cmhlistings}
-	\end{minipage}
-	\begin{minipage}{.6\textwidth}
-		\begin{cmhlistings}[style=demo]{\lstinline!tikzset! before}{lst:tikzsetbefore}
-\tikzset{
-shrink inner sep/.code={
-\pgfkeysgetvalue...
-\pgfkeysgetvalue...
-}
-}
-		\end{cmhlistings}
-	\end{minipage}%
-	\begin{minipage}{.6\textwidth}
-		\begin{cmhlistings}[style=demo]{\lstinline!tikzset! after}{lst:tikzsetafter}
-\tikzset{
-	shrink inner sep/.code={
-		\pgfkeysgetvalue...
-		\pgfkeysgetvalue...
-	}
-}
-		\end{cmhlistings}
-	\end{minipage}
-	\begin{minipage}{.6\textwidth}
-		\begin{cmhlistings}[style=demo]{\lstinline!pstricks! before}{lst:pstricksbefore}
-\def\Picture#1{%
-\def\stripH{#1}%
-\begin{pspicture}[showgrid...
-\psforeach{\row}{%
-{{3,2.8,2.7,3,3.1}},% <=== Only this
-{2.8,1,1.2,2,3},%
-...
-}{%
-\expandafter...
-}
-\end{pspicture}}
-		\end{cmhlistings}
-	\end{minipage}%
-	\begin{minipage}{.6\textwidth}
-		\begin{cmhlistings}[style=demo]{\lstinline!pstricks! after}{lst:pstricksafter}
-\def\Picture#1{%
-	\def\stripH{#1}%
-	\begin{pspicture}[showgrid...
-		\psforeach{\row}{%
-			{{3,2.8,2.7,3,3.1}},% <===
-			{2.8,1,1.2,2,3},%
-            ...
-			}{%
-			\expandafter...
-		}
-	\end{pspicture}}
-		\end{cmhlistings}
-	\end{minipage}
-\end{adjustwidth}
-
-\section{How to use the script}
-There are two ways to use \lstinline!latexindent.pl!: from the command line,
-and using \lstinline!arara!.  We will discuss how to change the settings and behaviour
-of the script in \cref{sec:defuseloc}.
-
-\lstinline!latexindent.pl! ships with \lstinline!latexindent.exe! for Windows
-users, so that you can use the script with or without a Perl distribution.
-If you plan to use \lstinline!latexindent.pl! (i.e, the original Perl script) then you will
-need a few standard Perl modules--see \vref{sec:requiredmodules} for details.
-
-In what follows, we will always refer to \lstinline!latexindent.pl!, but depending on
-your operating system and preference, you might substitute \lstinline!latexindent.exe! or
-simply \lstinline!latexindent!.
-
-\subsection{From the command line}\label{sec:commandline}
-\lstinline!latexindent.pl! has a number of different switches/flags/options, which
-can be combined in any way that you like. \lstinline!latexindent.pl!
-produces a \lstinline!.log! file, \lstinline!indent.log! every time it
-is run. There is a base of information that is written to \lstinline!indent.log!,
-but other additional information will be written depending
-on which of the following options are used.
-
-\begin{itemize}[labelsep=.5cm]
-	\item[] \lstinline!latexindent.pl!
-
-		This will output a welcome message to the terminal, including the version number
-		and available options.
-	\item[\verbitem{-h}] \lstinline!latexindent.pl -h!
-
-		As above this will output a welcome message to the terminal, including the version number
-		and available options.
-	\item[] \lstinline!latexindent.pl myfile.tex!
-
-		This will operate on \lstinline!myfile.tex!, but will simply output to your terminal; \lstinline!myfile.tex! will	not be changed in any way using this command.
-	\item[\verbitem{-w}] \lstinline!latexindent.pl -w myfile.tex!
-
-		This \emph{will} overwrite \lstinline!myfile.tex!, but it will
-		make a copy of \lstinline!myfile.tex! first. You can control the name of
-		the extension (default is \lstinline!.bak!), and how many different backups are made--
-		more on this in \cref{sec:defuseloc}; see \lstinline!backupExtension! and \lstinline!onlyOneBackUp!.
-
-		Note that if \lstinline!latexindent.pl! can not create the backup, then it
-		will exit without touching your original file; an error message will be given
-		asking you to check the permissions of the backup file.
-	\item[\verbitem{-o}] \lstinline!latexindent.pl -o myfile.tex outputfile.tex!
-
-		This will indent \lstinline!myfile.tex! and output it to \lstinline!outputfile.tex!,
-		overwriting it (\lstinline!outputfile.tex!) if it already exists. Note that if \lstinline!latexindent.pl! is called with both
-		the \lstinline!-w! and \lstinline!-o! switches, then \lstinline!-w! will
-		be ignored and \lstinline!-o! will take priority (this seems safer than the
-		other way round).
-
-		Note that using \lstinline!-o! is equivalent to using \lstinline!latexindent.pl myfile.tex > outputfile.tex!
-	\item[\verbitem{-s}] \lstinline!latexindent.pl -s myfile.tex!
-
-		Silent mode: no output will be given to the terminal.
-	\item[\verbitem{-t}] \lstinline!latexindent.pl -t myfile.tex!
-
-		Tracing mode: verbose output will be given to \lstinline!indent.log!. This
-		is useful if \lstinline!latexindent.pl! has made a mistake and you're
-		trying to find out where and why. You might also be interested in learning
-		about \lstinline!latexindent.pl!'s thought process--if so, this
-		switch is for you.
-	\item[\verbitem{-l}] \lstinline!latexindent.pl -l myfile.tex!
-
-		\label{page:localswitch}
-		Local settings: you might like to read \cref{sec:defuseloc} before
-		using this switch. \lstinline!latexindent.pl! will always load \lstinline!defaultSettings.yaml!
-		and if it is called with the \lstinline!-l! switch and it finds \lstinline!localSettings.yaml!
-		in the same directory as \lstinline!myfile.tex! then these settings will be
-		added to the indentation scheme. Information will be given in \lstinline!indent.log! on
-		the success or failure of loading \lstinline!localSettings.yaml!.
-	\item[\verbitem{-d}] \lstinline!latexindent.pl -d myfile.tex!
-
-		Only \lstinline!defaultSettings.yaml!: you might like to read \cref{sec:defuseloc} before
-		using this switch. By default, \lstinline!latexindent.pl! will always search for
-		\lstinline!indentconfig.yaml! or \lstinline!.indentconfig.yaml!  in your home directory. If you would prefer it not to do so
-		then (instead of deleting or renaming \lstinline!indentconfig.yaml!/\lstinline!.indentconfig.yaml!) you can simply
-		call the script with the \lstinline!-d! switch; note that this will also tell
-		the script to ignore \lstinline!localSettings.yaml! even if it has been called with the
-		\lstinline!-l! switch.
-
-	\item[\verbitem{-c}]\lstinline!latexindent.pl -c=/path/to/directory/ myfile.tex!
-
-		If you wish to have backup files and \lstinline!indent.log! written to a directory
-		other than the current working directory, then you can send these `cruft' files
-		to another directory.
-		% this switch was made as a result of http://tex.stackexchange.com/questions/142652/output-latexindent-auxiliary-files-to-a-different-directory
-\end{itemize}
-
-\subsection{From \lstinline!arara!}
-Using \lstinline!latexindent.pl! from the command line is fine for some folks, but
-others may find it easier to use from \lstinline!arara!. \lstinline!latexindent.pl!
-ships with an \lstinline!arara! rule, \lstinline!indent.yaml!, which can be copied
-to the directory of
-your other \lstinline!arara! rules; otherwise  you can add the directory in which \lstinline!latexindent.pl!
-resides to your \lstinline!araraconfig.yaml! file.
-
-Once you have told \lstinline!arara! where to find your \lstinline!indent! rule,
-you can use it any of the ways described in \cref{lst:arara} (or combinations thereof).
-In fact, \lstinline!arara! allows yet greater flexibility--you can use \lstinline!yes/no!, \lstinline!true/false!, or \lstinline!on/off! to toggle the various options.
-
-\begin{cmhlistings}[style=demo,escapeinside={(*@}{@*)}]{\lstinline!arara! sample usage}{lst:arara}
-%(*@@*) arara: indent
-%(*@@*) arara: indent: {overwrite: yes}
-%(*@@*) arara: indent: {output: myfile.tex}
-%(*@@*) arara: indent: {silent: yes}
-%(*@@*) arara: indent: {trace: yes}
-%(*@@*) arara: indent: {localSettings: yes}
-%(*@@*) arara: indent: {onlyDefault: on}
-%(*@@*) arara: indent: { cruft: /home/cmhughes/Desktop }
-\documentclass{article}
-...
-\end{cmhlistings}
-
-Hopefully the use of these rules is fairly self-explanatory, but for completeness
-\cref{tab:orbsandswitches} shows the relationship between \lstinline!arara! directive arguments and the
-switches given in \cref{sec:commandline}.
-
-\begin{table}[!ht]
-	\centering
-	\caption{\lstinline!arara! directive arguments and corresponding switches}
-	\label{tab:orbsandswitches}
-	\begin{tabular}{lc}
-		\toprule
-		\lstinline!arara! directive argument & switch         \\
-		\midrule
-		\lstinline!overwrite!                & \lstinline!-w! \\
-		\lstinline!output!                   & \lstinline!-o! \\
-		\lstinline!silent!                   & \lstinline!-s! \\
-		\lstinline!trace!                    & \lstinline!-t! \\
-		\lstinline!localSettings!            & \lstinline!-l! \\
-		\lstinline!onlyDefault!              & \lstinline!-d! \\
-		\lstinline!cruft!                    & \lstinline!-c! \\
-		\bottomrule
-	\end{tabular}
-\end{table}
-
-The \lstinline!cruft! directive does not work well when used with
-directories that contain spaces.
-
-\section{default, user, and local settings}\label{sec:defuseloc}
-\lstinline!latexindent.pl! loads its settings from \lstinline!defaultSettings.yaml!
-(rhymes with camel). The idea is to separate the behaviour of the script
-from the internal working--this is very similar to the way that we separate content
-from form when writing our documents in \LaTeX.
-
-\subsection{\lstinline!defaultSettings.yaml!}
-If you look in \lstinline!defaultSettings.yaml! you'll find the switches
-that govern the behaviour of \lstinline!latexindent.pl!. If you're not sure where
-\lstinline!defaultSettings.yaml! resides on your computer, don't worry as \lstinline!indent.log!
-will tell you where to find it.
-\lstinline!defaultSettings.yaml! is commented,
-but here is a description of what each switch is designed to do. The default
-value is given in each case.
-
-You can certainly feel free to edit \lstinline!defaultSettings.yaml!, but
-this is not ideal as it may be overwritten when you update your distribution--
-all of your hard work tweaking the script would be undone! Don't worry,
-there's a solution--feel free to peek ahead to \cref{sec:indentconfig} if you like.
-\begin{itemize}
-	\item[\verbitem{defaultIndent}] \lstinline!"\t"!
-
-		This is the default indentation (\lstinline!\t! means a tab) used in the absence of other details
-		for the command or environment we are working with--see \lstinline!indentRules!
-		for more details (\cpageref{page:indentRules}).
-
-		If you're interested in experimenting with \lstinline!latexindent.pl! then you
-		can \emph{remove} all indentation by setting \lstinline!defaultIndent: ""!
-	\item[\verbitem{backupExtension}] \lstinline!.bak!
-
-		If you call \lstinline!latexindent.pl! with the \lstinline!-w! switch (to overwrite
-		\lstinline!myfile.tex!) then it will create a backup file before doing
-		any indentation: \lstinline!myfile.bak0!
-
-		By default, every time you call \lstinline!latexindent.pl! after this with
-		the \lstinline!-w! switch it will create \lstinline!myfile.bak1!, \lstinline!myfile.bak2!,
-		etc.
-	\item[\verbitem{onlyOneBackUp}] \lstinline!0!
-
-		\label{page:onlyonebackup}
-		If you don't want a backup for every time that you call \lstinline!latexindent.pl! (so
-		you don't want \lstinline!myfile.bak1!, \lstinline!myfile.bak2!, etc) and you simply
-		want \lstinline!myfile.bak! (or whatever you chose \lstinline!backupExtension! to be)
-		then change \lstinline!onlyOneBackUp! to \lstinline!1!.
-
-	\item[\verbitem{maxNumberOfBackUps}]\lstinline!0!
-
-		Some users may only want a finite number of backup files,
-		say at most $3$, in which case, they can change this switch.
-		The smallest value of \lstinline!maxNumberOfBackUps! is $0$ which will \emph{not}
-		prevent backup files being made--in this case, the behaviour will be dictated
-		entirely by \lstinline!onlyOneBackUp!.
-		%\footnote{This was a feature request made on \href{https://github.com/cmhughes/latexindent.plx}{github}}
-	\item[\verbitem{cycleThroughBackUps}]\lstinline!0!
-
- Some users may wish to cycle through backup files, by deleting the 
- oldest backup file and keeping only the most recent; for example, 
- with \lstinline!maxNumberOfBackUps: 4!, and \lstinline!cycleThroughBackUps! 
- set to \lstinline!1!  then the \lstinline!copy! procedure given in \cref{lst:cycleThroughBackUps} 
- would be obeyed.
-
-		\begin{cmhlistings}[language=Perl]{\lstinline!cycleThroughBackUps!}{lst:cycleThroughBackUps}
-copy myfile.bak1 to myfile.bak0
-copy myfile.bak2 to myfile.bak1
-copy myfile.bak3 to myfile.bak2
-copy myfile.bak4 to myfile.bak3
-  \end{cmhlistings}
-
-	\item[\verbitem{indentPreamble}] \lstinline!0!
-
-		The preamble of a document can sometimes contain some trickier code
-		for \lstinline!latexindent.pl! to work with. By default, \lstinline!latexindent.pl!
-		won't try to operate on the preamble, but if you'd like it to try then
-		change \lstinline!indentPreamble! to \lstinline!1!.
-	\item[\verbitem{alwaysLookforSplitBraces}] \lstinline!1!
-
-		This switch tells \lstinline!latexindent.pl! to look for commands that
-		can split \emph{braces} across lines, such as \lstinline!parbox!, \lstinline!tikzset!, etc. In older
-		versions of \lstinline!latexindent.pl! you had to specify each one in \lstinline!checkunmatched!--this
-		clearly became tedious, hence the introduction of \lstinline!alwaysLookforSplitBraces!.
-
-		\emph{As long as you leave this switch on (set to 1) you don't need to specify which
-			commands can split braces across lines--you can ignore the
-			fields \lstinline!checkunmatched! and \lstinline!checkunmatchedELSE! described 
-            later on \cpageref{lst:checkunmatched}}.
-	\item[\verbitem{alwaysLookforSplitBrackets}] \lstinline!1!
-
-		This switch tells \lstinline!latexindent.pl! to look for commands that
-		can split \emph{brackets} across lines, such as \lstinline!psSolid!, \lstinline!pgfplotstabletypeset!,
-		etc. In older versions of \lstinline!latexindent.pl! you had to specify each one in \lstinline!checkunmatchedbracket!--
-		this clearly became tedious, hence the introduction of \lstinline!alwaysLookforSplitBraces!.
-
-		\emph{As long as you leave this switch on (set to 1) you don't need to specify which
-			commands can split brackets across lines--you can ignore \lstinline!checkunmatchedbracket! described later on 
-            \cpageref{lst:checkunmatched}}.
-
-	\item[\verbitem{removeTrailingWhitespace}] \lstinline!0!
-
-		By default \lstinline!latexindent.pl! indents every line (including empty lines)
-		which creates `trailing whitespace' feared by most version control systems. If
-		this option is set to \lstinline!1!, trailing whitespace is removed from all
-		lines, also non-empty ones. In general this should not create any problems, but
-		by precaution this option is turned off by default. Thanks to \href{https://github.com/vosskuhle}{vosskuhle} for
-		providing this feature.
-
-	\item[\verbitem{lookForAlignDelims}] This is the first example of a field
-		in \lstinline!defaultSettings.yaml! that has more than one line; \cref{lst:aligndelims}
-		shows more details.
-
-		\begin{cmhlistings}[style=yaml]{\lstinline!lookForAlignDelims!}{lst:aligndelims}
-lookForAlignDelims:
-   tabular: 1
-   tabularx: 1
-   longtable: 1
-   array: 1
-   matrix: 1
-   bmatrix: 1
-   pmatrix: 1
-   align: 1
-   align*: 1
-   alignat: 1
-   alignat*: 1
-   aligned: 1
-   cases: 1
-   dcases: 1
-   pmatrix: 1
-   listabla: 1
-	\end{cmhlistings}
-
-	The environments specified in this field will be operated on in a special way  by \lstinline!latexindent.pl!. In particular, it will try and align each column by its alignment
-	tabs. It does have some limitations (discussed further in \cref{sec:knownlimitations}),
-	but in many cases it will produce results such as those in \cref{lst:tabularbefore,lst:tabularafter}.
-
-	\begin{minipage}{.5\textwidth}
-		\begin{cmhlistings}[style=demo,columns=fixed]{\lstinline!tabular! before}{lst:tabularbefore}
-\begin{tabular}{cccc}
-1&	2 &3       &4\\
-5& &6       &\\
-\end{tabular}
-		\end{cmhlistings}
-	\end{minipage}
-	\begin{minipage}{.5\textwidth}
-		\begin{cmhlistings}[style=demo,columns=fixed]{\lstinline!tabular! after}{lst:tabularafter}
-\begin{tabular}{cccc}
- 1 & 2 & 3 & 4 \\
- 5 &   & 6 &   \\
-\end{tabular}
-		\end{cmhlistings}
-	\end{minipage}
-
-	If you find that \lstinline!latexindent.pl! does not perform satisfactorily on such
-	environments then you can either remove them from \lstinline!lookForAlignDelims! altogether, or set the relevant key to \lstinline!0!, for example \lstinline!tabular: 0!, or if you just want to ignore \emph{specific}
-	instances of the environment, you could wrap them in something from \lstinline!noIndentBlock! (see \cref{lst:noIndentBlock}).
-
-	\item If you have blocks of code that you wish to align at the \&  character that
-		are \emph{not} wrapped in, for example, \lstinline!\begin{tabular}...\end{tabular}!, then you use the mark up
-		illustrated in \cref{lst:alignmentmarkup}. Note that the \lstinline!%*! must be next to
-		each other, but that there can be any number of spaces (possibly none) between the
-		\lstinline!*! and \lstinline!\begin{tabular}!; note also that you may use any
-		environment name that you have specified in \lstinline!lookForAlignDelims!.
-		\begin{cmhlistings}[style=demo,columns=fixed]{Mark up for aligning delimiters outside of environments}{lst:alignmentmarkup}
-\matrix{%
-%* \begin{tabular}
- 1 & 2 & 3 & 4 \\
- 5 &   & 6 &   \\
-%* \end{tabular}
-}
-	\end{cmhlistings}
-
-	\item[\verbitem{verbatimEnvironments}] A field that contains a list of environments
-		that you would like left completely alone--no indentation will be done
-		to environments that you have specified in this field--see \cref{lst:verbatimEnvironments}.
-
-
-		\begin{cmhlistings}[style=yaml]{\lstinline!verbatimEnvironments!}{lst:verbatimEnvironments}
-verbatimEnvironments:
-    verbatim: 1
-    lstlisting: 1
-	\end{cmhlistings}
-	Note that if  you put an environment in \lstinline!verbatimEnvironments!
-	and in other fields such as \lstinline!lookForAlignDelims! or \lstinline!noAdditionalIndent!
-	then \lstinline!latexindent.pl! will \emph{always} prioritize \lstinline!verbatimEnvironments!.
-
-	\item[\verbitem{noIndentBlock}] If you have a block of code that you don't
-		want \lstinline!latexindent.pl! to touch (even if it is \emph{not} a verbatim-like
-		environment) then you can wrap it in an environment from \lstinline!noIndentBlock!;
-		you can use any name you like for this, provided you populate it as demonstrate in
-		\cref{lst:noIndentBlock}.
-
-		\begin{cmhlistings}[style=yaml]{\lstinline!noIndentBlock!}{lst:noIndentBlock}
-noIndentBlock:
-    noindent: 1
-    cmhtest: 1
-	\end{cmhlistings}
-
-	Of course, you don't want to have to specify these as null environments
-	in your code, so you use them with a comment symbol, \lstinline!%!, followed
-	by as many spaces (possibly none) as you like; see \cref{lst:noIndentBlockdemo} for
-	example.
-	\begin{cmhlistings}[style=demo,escapeinside={(*@}{@*)}]{\lstinline!noIndentBlock! demonstration}{lst:noIndentBlockdemo}
-%(*@@*) \begin{noindent}
-        this code
-                won't
-     be touched
-                    by
-             latexindent.pl!
-%(*@@*)\end{noindent}
-	\end{cmhlistings}
-
-	\item[\verbitem{noAdditionalIndent}] If you would prefer some of your
-		environments or commands not to receive any additional indent, then
-		populate \lstinline!noAdditionalIndent!; see \cref{lst:noAdditionalIndent}.
-		Note that these environments will still receive the \emph{current} level
-		of indentation unless they belong to \lstinline!verbatimEnvironments!, or \lstinline!noIndentBlock!.
-
-		\begin{cmhlistings}[style=yaml]{\lstinline!noAdditionalIndent!}{lst:noAdditionalIndent}
-noAdditionalIndent:
-    document: 1
-    myexample: 1
-    mydefinition: 1
-    problem: 1
-    exercises: 1
-    mysolution: 1
-    foreach: 0
-    widepage: 1
-    comment: 1
-    \[: 1
-    \]: 1
-    frame: 0
-	\end{cmhlistings}
-	Note in particular from \cref{lst:noAdditionalIndent} that if you wish content within
-	\lstinline!\[!  and \lstinline!\]! to receive no additional indentation then
-	you have to specify \emph{both} as \lstinline!1! (the default is \lstinline!0!).
-	If you do not specify both as the same value you may get some interesting results!
-	\item[\verbitem{indentRules}] If\label{page:indentRules} you would prefer to specify
-		individual rules for certain environments or commands, just
-		populate \lstinline!indentRules!; see \cref{lst:indentRules}
-
-		\begin{cmhlistings}[style=yaml]{\lstinline!indentRules!}{lst:indentRules}
-indentRules:
-   myenvironment: "\t\t"
-   anotherenvironment: "\t\t\t\t"
-   \[: "\t"
-	\end{cmhlistings}      %%%%%\] just here to stop vim from colouring the rest of my code
-	Note that in contrast to \lstinline!noAdditionalIndent! you do \emph{not}
-	need to specify both \lstinline!\[! and \lstinline!\]! in this field.
-
-	If you put an environment in both \lstinline!noAdditionalIndent! and in
-	\lstinline!indentRules! then \lstinline!latexindent.pl! will resolve the conflict
-	by ignoring \lstinline!indentRules! and prioritizing \lstinline!noAdditionalIndent!.
-	You will get a warning message in \lstinline!indent.log!; note that you will only
-	get one warning message per command or environment. Further discussion
-	is given in \cref{sec:fieldhierachy}.
-
-	\item[\verbitem{indentAfterHeadings}] This field enables the user to specify
-		indentation rules that take effect after heading commands such as \lstinline!\part!, \lstinline!\chapter!,
-		\lstinline!\section!, \lstinline!\subsection*! etc. This field is slightly different from all
-		of the fields that we have considered previously, because each element is
-		itself a field which has two elements: \lstinline!indent! and \lstinline!level!.
-		\begin{cmhlistings}[style=yaml]{\lstinline!indentAfterHeadings!}{lst:indentAfterHeadings}
-indentAfterHeadings:
-    part:
-       indent: 0
-       level: 1
-    chapter:
-       indent: 0
-       level: 2
-    section:
-       indent: 0
-       level: 3
-    ...
-	\end{cmhlistings}
-	The default settings do \emph{not} place indentation after a heading--you
-	can easily switch them on by changing \lstinline!indent: 0! to \lstinline!indent: 1!.
-	The \lstinline!level! field tells \lstinline!latexindent.pl! the hierarchy of the heading
-	structure in your document. You might, for example, like to have both \lstinline!section!
-	and \lstinline!subsection! set with \lstinline!level: 3! because you do not want the indentation to go too deep.
-
-	You can add any of your own custom heading commands to this field, specifying the \lstinline!level!
-	as appropriate.  You can also specify your own indentation in \lstinline!indentRules!--
-	you will find the default \lstinline!indentRules! contains \lstinline!chapter: " "! which
-	tells \lstinline!latexindent.pl! simply to use a space character after \lstinline!\chapter! headings
-	(once \lstinline!indent! is set to \lstinline!1! for \lstinline!chapter!).
-
-  \item[\verbitem{indentAfterItems}] The environments specified in \lstinline!indentAfterItems!  tell
-\lstinline!latexindent.pl! to look for \lstinline!\item! commands; if these switches are set to \lstinline!1!
-then indentation will be performed so as indent the code after each \lstinline!item!.
-    \begin{cmhlistings}{\lstinline!indentAfterItems!}{lst:indentafteritems}
-indentAfterItems:
-    itemize: 1
-    enumerate: 1
-    \end{cmhlistings}
-A demonstration is given in \cref{lst:itemsbefore,lst:itemsafter}
-
-	\begin{minipage}{.5\textwidth}
-		\begin{cmhlistings}[style=demo,xleftmargin=-3mm,columns=fixed]{\lstinline!items! before}{lst:itemsbefore}
-\begin{itemize}
-\item some text here
-some more text here
-some more text here
-\item another item
-\end{itemize}
-		\end{cmhlistings}
-	\end{minipage}
-	\begin{minipage}{.5\textwidth}
-		\begin{cmhlistings}[style=demo,xleftmargin=-3mm,columns=fixed]{\lstinline!items! after}{lst:itemsafter}
-\begin{itemize}
-	\item some text here
-		   some more text here
-		   some more text here
-	\item another item
-\end{itemize}
-		\end{cmhlistings}
-	\end{minipage}
-
-  \item[\verbitem{itemNames}] If you have your own \lstinline!item! commands (perhaps you 
-    prefer to use \lstinline!myitem!, for example)
-    then you can put populate them in \lstinline!itemNames!. 
-    For example, users of the \lstinline!exam! document class might like to add 
-\lstinline!parts! to \lstinline!indentAfterItems! and \lstinline!part! to \lstinline!itemNames! 
-to their user settings--see \vref{sec:indentconfig} for details of how to configure user settings, 
-and \vref{lst:mysettings} in particular.\label{page:examsettings}
-
-\item[\verbitem{constructIfElseFi}] The commands specified in this field 
-  will tell \lstinline!latexindent.pl! to look for constructs that 
-  have the form \lstinline!\if...! \lstinline!\else...! \lstinline!\fi!, such as, 
-  for example, \lstinline!\ifnum!; see \cref{lst:iffibefore,lst:iffiafter} for 
-  a before-and-after demonstration.
-
-	\begin{minipage}{.5\textwidth}
-		\begin{cmhlistings}[style=demo,xleftmargin=-3mm,columns=fixed]{\lstinline!if-else-fi! construct before}{lst:iffibefore}
-\ifnum\radius>5
-\ifnum\radius<16
-\draw[decorate,...
-\fi
-\fi
-\end{cmhlistings}
-	\end{minipage}
-	\begin{minipage}{.5\textwidth}
-		\begin{cmhlistings}[style=demo,xleftmargin=-3mm,columns=fixed]{\lstinline!if-else-fi! construct after}{lst:iffiafter}
-\ifnum\radius>5
-    \ifnum\radius<16
-    	\draw[decorate,...
-	\fi
-\fi
-\end{cmhlistings}
-	\end{minipage}
-	\begin{warning}
-		\emph{The following fields are marked in red, as they are not necessary
-			unless you wish to micro-manage your indentation scheme.
-			Note that in each case, you should \emph{not} use the backslash.}
-	\end{warning}
-
-	% to anyone reading the source code- I know the next line isn't the
-	% correct way to do it :)
-	\item[\color{red}\verbitem{checkunmatched}] Assuming you keep \lstinline!alwaysLookforSplitBraces! set to \lstinline!1! (which
-		is the default) then you don't need to worry about \lstinline!checkunmatched!.
-
-		Should you wish to deactivate \lstinline!alwaysLookforSplitBraces! by setting it to \lstinline!0!, then
-		you can populate \lstinline!checkunmatched! with commands that can split braces across
-		lines--see \cref{lst:checkunmatched}.
-
-		\begin{cmhlistings}[style=yaml]{\lstinline!checkunmatched!}{lst:checkunmatched}
-checkunmatched:
-    parbox: 1
-    vbox: 1
-	\end{cmhlistings}
-	\item[\color{red}\verbitem{checkunmatchedELSE}] Similarly, assuming you keep \lstinline!alwaysLookforSplitBraces! set to \lstinline!1! (which
-		is the default) then you don't need to worry about \lstinline!checkunmatchedELSE!.
-
-		As in \lstinline!checkunmatched!, should you wish to deactivate \lstinline!alwaysLookforSplitBraces! by setting it to \lstinline!0!, then
-		you can populate \lstinline!checkunmatchedELSE! with commands that can split braces across
-		lines \emph{and} have an `else' statement--see \cref{lst:checkunmatchedELSE}.
-
-		\begin{cmhlistings}[style=yaml]{\lstinline!checkunmatchedELSE!}{lst:checkunmatchedELSE}
-checkunmatchedELSE:
-    pgfkeysifdefined: 1
-    DTLforeach: 1
-    ifthenelse: 1
-	\end{cmhlistings}
-	\item[\color{red}\verbitem{checkunmatchedbracket}] Assuming you keep \lstinline!alwaysLookforSplitBrackets!
-		set to \lstinline!1! (which is the default) then you don't need to worry about \lstinline!checkunmatchedbracket!.
-
-		Should you wish to deactivate \lstinline!alwaysLookforSplitBrackets! by setting it
-		to \lstinline!0!, then you can populate \lstinline!checkunmatchedbracket! with commands that can
-		split \emph{brackets} across lines--see \cref{lst:checkunmatchedbracket}.
-
-		\begin{cmhlistings}[style=yaml]{\lstinline!checkunmatchedbracket!}{lst:checkunmatchedbracket}
-checkunmatchedbracket:
-    psSolid: 1
-    pgfplotstablecreatecol: 1
-    pgfplotstablesave: 1
-    pgfplotstabletypeset: 1
-    mycommand: 1
-	\end{cmhlistings}
-\end{itemize}
-
-\subsubsection{Hierarchy of fields}\label{sec:fieldhierachy}
-After reading the previous section, it should sound reasonable that
-\lstinline!noAdditionalIndent!, \lstinline!indentRules!, and
-\lstinline!verbatim! all serve mutually exclusive tasks. Naturally, you may
-well wonder what happens if you choose to ask \lstinline!latexindent.pl! to
-prioritize one above the other.
-
-For example, let's say that (after reading \cref{sec:indentconfig}) you put the fields in \cref{lst:conflict} into
-one of your settings files.
-\begin{cmhlistings}[style=yaml]{Conflicting ideas}{lst:conflict}
-indentRules:
-   myenvironment: "\t\t"
-noAdditionalIndent:
-   myenvironment: 1
-\end{cmhlistings}
-
-Clearly these fields conflict: first of all
-you are telling \lstinline!latexindent.pl! that \lstinline!myenvironment! should
-receive two tabs of indentation, and then you are telling it
-not to put any indentation in the environment. \lstinline!latexindent.pl!
-will always make the decision to prioritize \lstinline!noAdditionalIndent! above
-\lstinline!indentRules! regardless of the order that you load them in
-your settings file. The first
-time it encounters \lstinline!myenvironment! it will put a warning in \lstinline!indent.log!
-and delete the offending key from \lstinline!indentRules! so that any future
-conflicts will not have to be addressed.
-
-Let's consider another conflicting example in \cref{lst:bigconflict}
-\begin{cmhlistings}[style=yaml]{More conflicting ideas}{lst:bigconflict}
-lookForAlignDelims:
-   myenvironment: 1
-verbatimEnvironments:
-   myenvironment: 1
-\end{cmhlistings}
-This is quite a significant conflict--we are first of all telling \lstinline!latexindent.pl!
-to look for alignment delimiters in \lstinline!myenvironment! and then
-telling it that actually we would like \lstinline!myenvironment! to be considered
-as a \lstinline!verbatim!-like environment. Regardless of the order that we
-state \cref{lst:bigconflict} the \lstinline!verbatim! instruction will always win.
-As in \cref{lst:conflict} you will only receive a warning in \lstinline!indent.log! the
-first time \lstinline!latexindent.pl! encounters \lstinline!myenvironment! as the
-offending key is deleted from \lstinline!lookForAlignDelims!.
-
-To summarize, \lstinline!latexindent.pl! will prioritize the various fields in the
-following order:
-\begin{enumerate}
-	\item \lstinline!verbatimEnvironments!
-	\item \lstinline!noAdditionalIndent!
-	\item \lstinline!indentRules!
-\end{enumerate}
-\subsection{\lstinline!indentconfig.yaml! and \lstinline!.indentconfig.yaml! (for user settings)}\label{sec:indentconfig}
-Editing \lstinline!defaultSettings.yaml! is not ideal as it may be overwritten when
-updating your distribution--a better way to customize the settings to your liking
-is to set up your own settings file,
-\lstinline!mysettings.yaml! (or any name you like, provided it ends with \lstinline!.yaml!).
-The only thing you have to do is tell \lstinline!latexindent.pl! where to find it.
-
-\lstinline!latexindent.pl! will always check your home directory for \lstinline!indentconfig.yaml!
-and  \lstinline!.indentconfig.yaml! (unless
-it is called with the \lstinline!-d! switch),
-which is a plain text file you can create that contains the \emph{absolute}
-paths for any settings files that you wish \lstinline!latexindent.pl! to load. There is no difference
-between \lstinline!indentconfig.yaml! and \lstinline!.indentconfig.yaml!, other than the 
-fact that \lstinline!.indentconfig.yaml! is a `hidden' file; thank you to \href{https://github.com/cmhughes/latexindent.pl/pull/23}{Jacobo Diaz}
-for providing this feature. In what follows, we will use \lstinline!indentconfig.yaml!, but it 
-is understood that this equally represents \lstinline!.indentconfig.yaml! as well. If you 
-have both files in existence,  \lstinline!indentconfig.yaml! takes priority. 
-
-For Mac and Linux users, their home directory is \lstinline!~/username! while
-Windows (Vista onwards) is \lstinline!C:\Users\username! \footnote{If you're not sure
-	where to put \lstinline!indentconfig.yaml!, don't
-	worry \lstinline!latexindent.pl! will tell you in the log file exactly where to
-put it assuming it doesn't exist already.}
-\Cref{lst:indentconfig} shows a sample \lstinline!indentconfig.yaml! file.
-
-\begin{cmhlistings}[style=yaml]{\lstinline!indentconfig.yaml! (sample)}{lst:indentconfig}
-# Paths to user settings for latexindent.pl
-#
-# Note that the settings will be read in the order you
-# specify here- each successive settings file will overwrite
-# the variables that you specify
-
-paths:
-- /home/cmhughes/Documents/yamlfiles/mysettings.yaml
-- /home/cmhughes/folder/othersettings.yaml
-- /some/other/folder/anynameyouwant.yaml
-- C:\Users\chughes\Documents\mysettings.yaml
-- C:\Users\chughes\Desktop\test spaces\more spaces.yaml
-\end{cmhlistings}
-
-Note that the \lstinline!.yaml! files you specify in \lstinline!indentconfig.yaml!
-will be loaded in the order that you write them in. Each file doesn't have
-to have every switch from \lstinline!defaultSettings.yaml!; in fact, I recommend
-that you only keep the switches that you want to \emph{change} in these
-settings files.
-
-To get started with your own settings file, you might like to save a copy of
-\lstinline!defaultSettings.yaml! in another directory and call it, for
-example, \lstinline!mysettings.yaml!. Once you have added the path to \lstinline!indentconfig.yaml!
-feel free to start changing the switches and adding more environments to it
-as you see fit--have a look at \cref{lst:mysettings} for an example
-that uses four tabs for the default indent, adds the \lstinline!tabbing!
-environment to the list of environments that contains alignment delimiters, 
-and adds the changes we described on \cpageref{page:examsettings}.
-
-\begin{cmhlistings}[style=yaml]{\lstinline!mysettings.yaml! (example)}{lst:mysettings}
-# Default value of indentation
-defaultIndent: "\t\t\t\t"
-
-# environments that have tab delimiters, add more
-# as needed
-lookForAlignDelims:
-   tabbing: 1
-
-# If you use the exam documentclass, you might 
-# like the following settings
-# environments that have \item commands
-indentAfterItems:
-    parts: 1
-
-# commands to be treated like \item
-itemNames:
-    part: 1
-\end{cmhlistings}
-
-You can make sure that your settings are loaded by checking \lstinline!indent.log!
-for details--if you have specified a path that \lstinline!latexindent.pl! doesn't
-recognize then you'll get a warning, otherwise you'll get confirmation that
-\lstinline!latexindent.pl! has read your settings file \footnote{Windows users
-	may find that they have to end \lstinline!.yaml! files with a blank line}.
-
-\begin{warning}
-	When editing \lstinline!.yaml! files it is \emph{extremely} important
-	to remember how sensitive they are to spaces. I highly recommend copying
-	and pasting from \lstinline!defaultSettings.yaml! when you create your
-	first \lstinline!whatevernameyoulike.yaml! file.
-
-	If \lstinline!latexindent.pl! can not read your \lstinline!.yaml! file it
-	will tell you so in \lstinline!indent.log!.
-\end{warning}
-
-\subsection{\lstinline!localSettings.yaml!}
-You may remember on \cpageref{page:localswitch} we discussed the \lstinline!-l! switch
-that tells \lstinline!latexindent.pl! to look for \lstinline!localSettings.yaml! in the
-\emph{same directory} as \lstinline!myfile.tex!. This settings file will
-be read \emph{after} \lstinline!defaultSettings.yaml! and, assuming they exist,
-user settings.
-
-In contrast to the \emph{user} settings which can be named anything you like (provided that
-they are detailed in \lstinline!indentconfig.yaml!), the \emph{local} settings file
-must be called \lstinline!localSettings.yaml!. It can contain any switches that you'd
-like to change--a sample is shown in \cref{lst:localSettings}.
-
-\begin{cmhlistings}[style=yaml]{\lstinline!localSettings.yaml! (example)}{lst:localSettings}
-# Default value of indentation
-defaultIndent: " "
-
-# environments that have tab delimiters, add more
-# as needed
-lookForAlignDelims:
-   tabbing: 0
-
-#  verbatim environments- environments specified
-#  in this hash table will not be changed at all!
-verbatimEnvironments:
-    cmhenvironment: 0
-\end{cmhlistings}
-
-You can make sure that your local settings are loaded by checking \lstinline!indent.log!
-for details--if \lstinline!localSettings.yaml! can not be read then you will
-get a warning, otherwise you'll get confirmation that
-\lstinline!latexindent.pl! has read \lstinline!localSettings.yaml!.
-
-\subsection{Settings load order}\label{sec:loadorder}
-\lstinline!latexindent.pl! loads the settings files in the following order:
-\begin{enumerate}
-	\item \lstinline!defaultSettings.yaml! (always loaded, can not be renamed)
-	\item \lstinline!anyUserSettings.yaml! (and any other arbitrarily-named files specified in \lstinline!indentconfig.yaml!)
-	\item \lstinline!localSettings.yaml! (if found in same directory as \lstinline!myfile.tex! and called
-		with \lstinline!-l! switch; can not be renamed)
-\end{enumerate}
-A visual representation of this is given in \cref{fig:loadorder}.
-
-\begin{figure}
-	\centering
-	\begin{tikzpicture}[
-			needed/.style={very thick, draw=blue,fill=blue!20,
-				text centered, minimum height=2.5em,rounded corners=1ex},
-			optional/.style={draw=black, very thick,scale=0.8,
-				text centered, minimum height=2.5em,rounded corners=1ex},
-			optionalfill/.style={fill=black!10},
-			connections/.style={draw=black!30,dotted,line width=3pt,text=red},
-		]
-		% Draw diagram elements
-		\node (latexindent) [needed,circle]  {\lstinline!latexindent.pl!};
-		\node (default) [needed,above right=.5cm of latexindent]  {\lstinline!defaultSettings.yaml!};
-		\node (indentconfig) [optional,right=of latexindent]  {\lstinline!indentconfig.yaml!};
-		\node (any) [optional,optionalfill,above right=of indentconfig]  {\lstinline!any.yaml!};
-		\node (name) [optional,optionalfill,right=of indentconfig]  {\lstinline!name.yaml!};
-		\node (you) [optional,optionalfill,below right=of indentconfig]  {\lstinline!you.yaml!};
-		\node (want) [optional,optionalfill,below=of indentconfig]  {\lstinline!want.yaml!};
-		\node (local) [optional,below=of latexindent]  {\lstinline!localSettings.yaml!};
-		% Draw arrows between elements
-		\draw[connections,solid] (latexindent) to[in=-90]node[pos=0.5,anchor=north]{1} (default.south) ;
-		\draw[connections,optional] (latexindent) -- node[pos=0.5,anchor=north]{2} (indentconfig) ;
-		\draw[connections,optional] (indentconfig) to[in=-90] (any.south) ;
-		\draw[connections,optional] (indentconfig) -- (name) ;
-		\draw[connections,optional] (indentconfig) to[out=-45,in=90] (you) ;
-		\draw[connections,optional] (indentconfig) -- (want) ;
-		\draw[connections,optional] (latexindent) -- node[pos=0.5,anchor=west]{3} (local) ;
-	\end{tikzpicture}
-	\caption{Schematic of the load order described in \cref{sec:loadorder}; solid lines represent
-		mandatory files, dotted lines represent optional files. \lstinline!indentconfig.yaml! can
-		contain as many files as you like--the files will be loaded in order; if you specify
-	settings for the same field in more than one file, the most recent takes priority. }
-	\label{fig:loadorder}
-\end{figure}
-
-\subsection{An important example}
-I was working on a document that had the text shown in \cref{lst:casestudy}.
-\begin{cmhlistings}[style=demo,escapeinside={(*@}{@*)}]{When to set \lstinline!alwaysLookforSplitBrackets=0!}{lst:casestudy}
-Hence determine how many zeros the function $h(x)=f(x)-g(x)$
-has on the interval $[0,9)$.(*@\label{line:interval1}@*)
-\begin{shortsolution}
-	The function $h$ has $10$ zeros on the interval $[0,9)$.(*@\label{line:interval2}@*)
-\end{shortsolution}
-\end{cmhlistings}
-I had allowed \lstinline!alwaysLookforSplitBrackets=1!, which is the default setting.
-Unfortunately, this caused undesired results, as \lstinline!latexindent.pl! thought that the opening
-\lstinline![!  in the interval notation (\cref{line:interval1,line:interval2})
-was an opening brace that needed to be closed (with a corresponding \lstinline!]!). Clearly
-this was inappropriate, but also expected since \lstinline!latexindent.pl! was simply
-following its matching rules.
-
-In this particular instance, I set up \lstinline!localSettings.yaml!
-to contain \lstinline!alwaysLookforSplitBrackets: 0! and then specified the commands
-that could split brackets across lines (such as \lstinline!begin{axis}!) individually
-in \lstinline!checkunmatchedbracket!.  Another option would have been to wrap the
-the line in an environment from \lstinline!noIndentBlock! which treats its contents
-as a verbatim environment.
-
-
-\section{Known limitations}\label{sec:knownlimitations}
-There are a number of known limitations of the script, and almost certainly quite a
-few that are \emph{unknown}!
-
-The main limitation is to do with the alignment routine of environments that contain
-delimiters--in other words, environments that are entered in \lstinline!lookForAlignDelims!.
-Indeed, this is the only part of the script that can \emph{potentially} remove
-lines from \lstinline!myfile.tex!. Note that \lstinline!indent.log! will always
-finish with a comparison of line counts before and after.
-
-The routine works well for `standard' blocks of code that have the same number of \lstinline!&!
-per line, but it will not do anything for lines that do not--such examples
-include \lstinline!tabular! environments that use \lstinline!\multicolumn! or
-perhaps spread cell contents across multiple lines.  For each alignment block (\lstinline!tabular!,
-\lstinline!align!, etc) \lstinline!latexindent.pl! first of all makes a record
-of the maximum number of \lstinline!&!; if each row does not have that
-number of \lstinline!&! then it will not try to format that row. Details
-will be given in \lstinline!indent.log! assuming that \lstinline!trace! mode
-is active.
-
-If you have a \lstinline!verbatim!-like environment inside a \lstinline!tabular!-like
-environment, the \lstinline!verbatim! environment \emph{will} be formatted, which
-is probably not what you want. I hope to address this in future versions, but for the
-moment wrap it in a \lstinline!noIndentBlock! (see \cpageref{lst:noIndentBlockdemo}).
-
-You can run \lstinline!latexindent! on \lstinline!.sty! and  \lstinline!.cls! files, but it may
-struggle with some of the pattern matching; if you find such a case in which it struggles, please feel free 
-to report it at \href{https://github.com/cmhughes/latexindent.pl}{https://github.com/cmhughes/latexindent.pl}, and 
-in the meantime, use a \lstinline!noIndentBlock! (see \cpageref{lst:noIndentBlockdemo}).
-
-I hope that this script is useful to some--if you find an example where the
-script does not behave as you think it should, feel free to e-mail me or else
-come and find me on the \url{http://tex.stackexchange.com} site; I'm often around
-and in the chat room.
-
-\printbibliography[heading=bibintoc]
-
-\appendix
-\section{Required \lstinline!Perl! modules}\label{sec:requiredmodules}
-If you intend to use \lstinline!latexindent.pl! and \emph{not} one of the supplied standalone executable files, then you will need a few standard Perl modules--if you can run the
-minimum code in \cref{lst:helloworld} (\lstinline!perl helloworld.pl!) then you will be able to run \lstinline!latexindent.pl!, otherwise you may
-need to install the missing modules.
-
-\begin{cmhlistings}[language=Perl]{\lstinline!helloworld.pl!}{lst:helloworld}
-#!/usr/bin/perl
-
-use strict;
-use warnings;
-use FindBin;
-use YAML::Tiny;
-use File::Copy;
-use File::Basename;
-use Getopt::Long;
-use File::HomeDir;
-
-print "hello world";
-exit;
-\end{cmhlistings}
-My default installation on Ubuntu 12.04 did \emph{not} come
-with all of these modules as standard, but Strawberry Perl for Windows \cite{strawberryperl}
-did.
-
-Installing the modules given in \cref{lst:helloworld} will vary depending on your
-operating system and \lstinline!Perl! distribution. For example, Ubuntu users
-might visit the software center, or else run
-\begin{lstlisting}[numbers=none]
-sudo perl -MCPAN -e 'install "File::HomeDir"'
-\end{lstlisting}
-Strawberry Perl users on Windows might use
-\lstinline!CPAN client!. All of the modules are readily available on CPAN \cite{cpan}.
-
-As of Version 2.1R,  \lstinline!indent.log! will contain details of the location
-of the Perl modules on your system.  \lstinline!latexindent.exe! is a standalone
-executable for Windows (and therefore does not require a Perl distribution) and caches copies of the Perl modules onto your system; if you 
-wish to see where they are cached, use the  \lstinline!trace! option, e.g  \lstinline!latexindent.exe -t myfile.tex!.
-
-\section{The \lstinline!arara! rule}
-The \lstinline!arara! rule (\lstinline!indent.yaml!) contains lines such as those
-given in \cref{lst:arararule}. With this setup, the user \emph{always} has
-to specify whether or not they want (in this example) to use the \lstinline!trace!
-identifier.
-\begin{cmhlistings}[style=yaml,numbers=none]{The \lstinline!arara! rule}{lst:arararule}
-...
-arguments:
-- identifier: trace
-  flag: <arara> @{ isTrue( parameters.trace, "-t" ) }
-...
-\end{cmhlistings}
-
-If you would like to have the \lstinline!trace! option on by default every time you
-call \lstinline!latexindent.pl! from \lstinline!arara! (without having to write \lstinline!% arara: indent: {trace: yes}!), then simply
-amend \cref{lst:arararule} so that it looks like \cref{lst:arararulemod}.
-\begin{cmhlistings}[style=yaml,numbers=none]{The \lstinline!arara! rule (modified)}{lst:arararulemod}
-...
-arguments:
-- identifier: trace
-  flag: <arara> @{ isTrue( parameters.trace, "-t" ) }
-  default: "-t"
-...
-\end{cmhlistings}
-
-With this modification in place, you now simply to write \lstinline!% arara: indent! and
-\lstinline!trace! mode will be activated by default. If you wish to turn off \lstinline!trace!
-mode then you can write \lstinline!% arara: indent: {trace: off}!.
-
-Of course, you can apply these types of modifications to \emph{any} of the identifiers,
-but proceed with caution if you intend to do this for \lstinline!overwrite!.
-
-\end{document}
-
-set local settings to include psset as an item
-\documentclass[pstricks,border=30pt,12pt]{standalone}
-\usepackage{pst-eucl}
-\psset{opacity=.2}
-\begin{document}
-\begin{pspicture}(7,7)
-    \pstGeonode[PosAngle={-90,-90,0,-90,180}]{A}(5,0){B}(7,1){C}(2,1){D}(0,5){A_1}
-    \pstTranslation[PosAngle=120]{A}{A_1}{B,C,D}[B_1,C_1,D_1]
-    \pspolygon(A)(B)(C)(C_1)(D_1)(A_1)
-    \psline(A_1)(B_1)(C_1)(B)(B_1)
-    \pstMiddleAB[PosAngle=20]{B}{C_1}{E}
-    \psline(E)(C)
-    \pstMarkAngle{D}{E}{C}{}
-    \psset{linestyle=dashed}
-    \psline(C)(D)(D_1)
-    \psline(A)(D)
-    \psline(B)(D)(C_1)
-    \psline(D)(E)
-    \psset{linestyle=none,fillstyle=solid,fillcolor=gray}
-    \pspolygon(A)(D)(D_1)(A_1)
-    \pspolygon(B)(C_1)(D)
-\end{pspicture}
-\end{document}
-\begin{frame}[label=timeline]{The journey\ldots}
-   \begin{tikzpicture}
-      \pause
-         \node[cloudy](spring2010){Spr...
-         \node[below=0mm of spring2010...
-      \pause
-         \node[cloudy,right=of spring20...
-         \node[below=0mm of summer2010...
-      \pause
-         \node[cloudy,right=of summer2...
-         \node[below=0mm of fall2010...
-    \end{tikzpicture}
-\end{frame}

Modified: trunk/Master/texmf-dist/doc/support/latexindent/success/alignmentoutsideEnvironments.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/alignmentoutsideEnvironments.tex	2016-10-27 01:16:43 UTC (rev 42365)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/alignmentoutsideEnvironments.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -1,18 +1,18 @@
 % arara: indent: {overwrite: true, trace: yes, silent: yes}
 
 \matrix{%
-	% \begin{tabular}
-	& A_1 & A_2 & A_3 & A_4 & A_5 & A_6 & A_7 & A_8 & A_9 \\\hline
-	A_1 & 0   &     &     &     &     &     &     &     &     \\
-	A_2 &     & 0   &     &     &     &     &     &     &     \\
-	A_3 & &     & 0   &     &     &     &     &     &     \\
-	A_4 &     &   &     & 0   &     &     &     &     &     \\
-	A_5 &    &     &  &     & 0   &     &     &     &     \\
-	A_6 &    &    &     &     & & 0   &     &     &     \\
-	A_7 &           &    &     &     &     &     & 0   &     &     \\
-	A_8 &     &     &     &     &     &     & & 0   &     \\
-	A_9 &     &    &    &    &    &  &   &     & 0   \\
-	%* \end{align}
+	%* \begin{tabular}
+		    & A_1 & A_2 & A_3 & A_4 & A_5 & A_6 & A_7 & A_8 & A_9 \\\hline
+		A_1 & 0   &     &     &     &     &     &     &     &     \\
+		A_2 &     & 0   &     &     &     &     &     &     &     \\
+		A_3 &     &     & 0   &     &     &     &     &     &     \\
+		A_4 &     &     &     & 0   &     &     &     &     &     \\
+		A_5 &     &     &     &     & 0   &     &     &     &     \\
+		A_6 &     &     &     &     &     & 0   &     &     &     \\
+		A_7 &     &     &     &     &     &     & 0   &     &     \\
+		A_8 &     &     &     &     &     &     &     & 0   &     \\
+		A_9 &     &     &     &     &     &     &     &     & 0   \\
+	%* \end{tabular}
 }
 \begin{tabular}
 	    & A_1 & A_2 & A_3 & A_4 & A_5 & A_6 & A_7 & A_8 & A_9 \\\hline

Modified: trunk/Master/texmf-dist/doc/support/latexindent/success/braceTest.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/braceTest.tex	2016-10-27 01:16:43 UTC (rev 42365)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/braceTest.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -48,7 +48,7 @@
 
 \parbox{
 	\begin{something}
-
+						
 	\end{something}
 }
 

Added: trunk/Master/texmf-dist/doc/support/latexindent/success/bracketTest.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/bracketTest.tex	                        (rev 0)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/bracketTest.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -0,0 +1,6 @@
+\cmh[
+	here is some text
+]
+\cmh{
+	here is some text
+}


Property changes on: trunk/Master/texmf-dist/doc/support/latexindent/success/bracketTest.tex
___________________________________________________________________
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Modified: trunk/Master/texmf-dist/doc/support/latexindent/success/environments.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/environments.tex	2016-10-27 01:16:43 UTC (rev 42365)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/environments.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -9,7 +9,7 @@
 	      \begin{align*}
 	      	{\color{red}(3x^3+y)}(-4x^3+y) & =	{\color{red}(3x^3+y)}(-4x^3)+{\color{red}(3x^3+y)}(y) \\
 	      	                               & =	-12x^6-4x^3y+3x^3y+y^2                                \\
-	      	                               & =	-12x^6-x^3y+y^2
+	      	                               & =	-12x^6-x^3y+y^2                                       
 	      \end{align*}
 \end{enumerate}
 \begin{enumerate}
@@ -19,7 +19,7 @@
 	      \begin{align*}
 	      	{\color{red}(3x^3+y)}(-4x^3+y) & =	{\color{red}(3x^3+y)}(-4x^3)+{\color{red}(3x^3+y)}(y) \\
 	      	                               & =	-12x^6-4x^3y+3x^3y+y^2                                \\
-	      	                               & =	-12x^6-x^3y+y^2
+	      	                               & =	-12x^6-x^3y+y^2                                       
 	      \end{align*}
 \end{enumerate}
 

Added: trunk/Master/texmf-dist/doc/support/latexindent/success/filecontents1.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/filecontents1.tex	                        (rev 0)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/filecontents1.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -0,0 +1,18 @@
+% arara: indent: {overwrite: true, trace: false, localSettings: yes}
+
+\documentclass{article}
+\begin{filecontents}{mybib.bib}
+	\begin{document}
+	here is some text
+	\end{document}
+\end{filecontents}
+
+\begin{document}
+\begin{myotherenvironment}
+	some text goes here
+	some text goes here
+	some text goes here
+	some text goes here
+\end{myotherenvironment}
+
+\end{document}


Property changes on: trunk/Master/texmf-dist/doc/support/latexindent/success/filecontents1.tex
___________________________________________________________________
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Added: trunk/Master/texmf-dist/doc/support/latexindent/success/filecontents2.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/filecontents2.tex	                        (rev 0)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/filecontents2.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -0,0 +1,21 @@
+% arara: indent: {overwrite: true, trace: false, localSettings: yes}
+
+\documentclass{article}
+\usepackage{verbatim}
+\begin{filecontents}{mybib.bib}
+	\begin{document}
+	here is some text
+	\end{document}
+\end{filecontents}
+
+\begin{document}
+
+\begin{verbatim}
+\begin{filecontents}{mybib.bib}
+	\begin{document}
+	here is some text
+	\end{document}
+        \end{filecontents}
+\end{verbatim}
+
+\end{document}


Property changes on: trunk/Master/texmf-dist/doc/support/latexindent/success/filecontents2.tex
___________________________________________________________________
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Added: trunk/Master/texmf-dist/doc/support/latexindent/success/ifelsefiSmall.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/ifelsefiSmall.tex	                        (rev 0)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/ifelsefiSmall.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -0,0 +1,10 @@
+\ifnum\radius>5
+	\ifnum\radius<16
+		\draw[decorate,decoration={crosses},orange!\pgfmathresult!black] (1,1) circle ( \radius ex-5ex);
+	\fi
+\fi
+\ifnum
+	1
+\else
+	2
+\fi


Property changes on: trunk/Master/texmf-dist/doc/support/latexindent/success/ifelsefiSmall.tex
___________________________________________________________________
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Added: trunk/Master/texmf-dist/doc/support/latexindent/success/items1.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/items1.tex	                        (rev 0)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/items1.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -0,0 +1,10 @@
+\begin{itemize}
+	\item one
+	      here is some text
+	      here is some text
+	      here is some text
+	\item two
+	      here is some text
+	      here is some text
+	      here is some text
+\end{itemize}


Property changes on: trunk/Master/texmf-dist/doc/support/latexindent/success/items1.tex
___________________________________________________________________
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Added: trunk/Master/texmf-dist/doc/support/latexindent/success/items2.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/items2.tex	                        (rev 0)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/items2.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -0,0 +1,21 @@
+\begin{enumerate}
+	\item one
+	      here is some text
+	      here is some text
+	      here is some text
+	\item two
+	      here is some text
+	      here is some text
+	      here is some text
+	      \begin{itemize}
+	      	\item bullet
+	      	      here is some text
+	      	      here is some text
+	      	      here is some text
+	      	\item bullet
+	      	      here is some text
+	      	      here is some text
+	      	      here is some text
+	      \end{itemize}
+	      some text
+\end{enumerate}


Property changes on: trunk/Master/texmf-dist/doc/support/latexindent/success/items2.tex
___________________________________________________________________
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Added: trunk/Master/texmf-dist/doc/support/latexindent/success/items3.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/items3.tex	                        (rev 0)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/items3.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -0,0 +1,22 @@
+\begin{myenv}
+	\begin{itemize}
+	\item one
+	      here is some text
+	      here is some text
+	      here is some text
+	\item two
+	      here is some text
+	      here is some text
+	      here is some text
+	\end{itemize}
+\end{myenv}
+\begin{itemize}
+\item one
+      here is some text
+      here is some text
+      here is some text
+\item two
+      here is some text
+      here is some text
+      here is some text
+\end{itemize}


Property changes on: trunk/Master/texmf-dist/doc/support/latexindent/success/items3.tex
___________________________________________________________________
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Added: trunk/Master/texmf-dist/doc/support/latexindent/success/items4.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/items4.tex	                        (rev 0)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/items4.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -0,0 +1,22 @@
+\begin{myenv}
+\begin{itemize}
+\item one
+      here is some text
+      here is some text
+      here is some text
+\item two
+      here is some text
+      here is some text
+      here is some text
+\end{itemize}
+\end{myenv}
+\begin{itemize}
+\item one
+      here is some text
+      here is some text
+      here is some text
+\item two
+      here is some text
+      here is some text
+      here is some text
+\end{itemize}


Property changes on: trunk/Master/texmf-dist/doc/support/latexindent/success/items4.tex
___________________________________________________________________
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Modified: trunk/Master/texmf-dist/doc/support/latexindent/success/matrix.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/matrix.tex	2016-10-27 01:16:43 UTC (rev 42365)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/matrix.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -9,6 +9,6 @@
 		                & 2 &                       &                       & \fullmoon &                       &                          &                          &                         \\
 		{\color{blue}*} & 1 &                       &                       &           &                       & {\color{blue}\newmoon}   &                          &                         \\\hline
 		                &   & 1                     & 2                     & 3         & 4                     & 5                        & 6                        &                         \\
-		\%              &   & {\color{red}*}        & {\color{red}*}        &           & {\color{red}*}        &                          &                          &
+		\%              &   & {\color{red}*}        & {\color{red}*}        &           & {\color{red}*}        &                          &                          &                         
 	\end{matrix}
 \]

Modified: trunk/Master/texmf-dist/doc/support/latexindent/success/nestedalignment.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/nestedalignment.tex	2016-10-27 01:16:43 UTC (rev 42365)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/nestedalignment.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -9,7 +9,7 @@
 	\end{array}
 	\right.
 	\)
-	        & Substitution {\em or }Addition & Because it is easy to solve for $x$ in the 1st equation
+	        & Substitution {\em or }Addition & Because it is easy to solve for $x$ in the 1st equation                  
 	{\em or}
 	Because it is easy to multiply the first equation by -1 \\ \hline
 	\(
@@ -29,5 +29,5 @@
 	\end{array}
 	\right.
 	\)
-	        & Substitution                   & Because the first equation can easily be solved for one of the variables
+	        & Substitution                   & Because the first equation can easily be solved for one of the variables 
 \end{tabular}

Modified: trunk/Master/texmf-dist/doc/support/latexindent/success/nestedalignment1.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/nestedalignment1.tex	2016-10-27 01:16:43 UTC (rev 42365)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/nestedalignment1.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -5,7 +5,7 @@
 	\%\&\%\%  &   &       \\ % &   & 2x+y & =8
 	x+y       & = & 6     \\
 	2x+y & =8
-	2x+y \&\& & = & 8 % trailine comment
+	2x+y \&\& & = & 8 % trailine comment   
 \end{tabular}
 
 here's another line $\{ x^2 + 5x \}$

Modified: trunk/Master/texmf-dist/doc/support/latexindent/success/outputfile.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/outputfile.tex	2016-10-27 01:16:43 UTC (rev 42365)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/outputfile.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -48,7 +48,7 @@
 
 \parbox{
 	\begin{something}
-
+						
 	\end{something}
 }
 

Modified: trunk/Master/texmf-dist/doc/support/latexindent/success/sampleAFTER.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/sampleAFTER.tex	2016-10-27 01:16:43 UTC (rev 42365)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/sampleAFTER.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -25,7 +25,7 @@
  a \emph{decreasing} function.  Similarly, if $a>0$ then $g$ is
  \emph{concave up} and if $a<0$ then $g$ is \emph{concave down}. Graphical
  representations of these statements are given in \cref{poly:fig:linquad}.
-
+   
  \begin{figure}[!htb]
  	\setlength{\figurewidth}{.2\textwidth}
  	\begin{subfigure}{\figurewidth}
@@ -94,7 +94,7 @@
  	\caption{Typical graphs of linear and quadratic functions.}
  	\label{poly:fig:linquad}
  \end{figure}
-
+   
  Let's look a little more closely at the formulas for $f$ and $g$ in
  \cref{poly:eq:linquad}. Note that the \emph{degree}
  of $f$ is $1$ since the highest power of $x$ that is present in the
@@ -101,11 +101,11 @@
  formula for $f(x)$ is $1$. Similarly, the degree of $g$ is $2$ since
  the highest power of $x$ that is present in the formula for $g(x)$
  is $2$.
-
+   
  In this section we will build upon our knowledge of these elementary
  functions. In particular, we will generalize the functions $f$ and $g$ to a function $p$ that has
  any degree that we wish.
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   March 2012
@@ -161,7 +161,7 @@
  	\end{subproblem}
  	\end{problem}
  \end{essentialskills}
-
+   
  \subsection*{Power functions with positive exponents}
  	The study of polynomials will rely upon a good knowledge
  	of power functions| you may reasonably ask, what is a power function?
@@ -171,17 +171,17 @@
  			f(x) = a_n x^n
  		\]
  		where $n$ can be any real number.
-
+ 		 		 		
  		Note that for this section we will only be concerned with the
  		case when $n$ is a positive integer.
  	\end{pccdefinition}
-
+ 	 	 	
  	You may find assurance in the fact that you are already very comfortable
  	with power functions that have $n=1$ (linear) and $n=2$ (quadratic). Let's
  	explore some power functions that you might not be so familiar with.
  	As you read \cref{poly:ex:oddpow,poly:ex:evenpow}, try and spot
  	as many patterns and similarities as you can.
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   March 2012
@@ -199,12 +199,12 @@
  			the long-run behavior of each of the functions is the same, and in particular
  			\begin{align*}
  				f(x)\rightarrow\infty                           & \text{ as } x\rightarrow\infty  \\
- 				\mathllap{\text{and }}   f(x)\rightarrow-\infty & \text{ as } x\rightarrow-\infty
+ 				\mathllap{\text{and }}   f(x)\rightarrow-\infty & \text{ as } x\rightarrow-\infty 
  			\end{align*}
  			The same results hold for $g$ and $h$.
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	\begin{figure}[!htb]
  		\begin{minipage}{.45\textwidth}
  			\begin{tikzpicture}
@@ -254,7 +254,7 @@
  			\label{poly:fig:evenpow}
  		\end{minipage}%
  	\end{figure}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   March 2012
@@ -271,12 +271,12 @@
  			of each of the functions is the same, and in particular
  			\begin{align*}
  				F(x)\rightarrow\infty                          & \text{ as } x\rightarrow\infty  \\
- 				\mathllap{\text{and }}   F(x)\rightarrow\infty & \text{ as } x\rightarrow-\infty
+ 				\mathllap{\text{and }}   F(x)\rightarrow\infty & \text{ as } x\rightarrow-\infty 
  			\end{align*}
  			The same result holds for $G$ and $H$.
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	\begin{doyouunderstand}
  		\begin{problem}
  		Repeat \cref{poly:ex:oddpow,poly:ex:evenpow} using (respectively)
@@ -285,7 +285,7 @@
  			\begin{shortsolution}
  				The functions $f$, $g$, and $h$ have domain $(-\infty,\infty)$ and
  				are graphed below.
-
+ 				 				 				
  				\begin{tikzpicture}
  					\begin{axis}[
  							framed,
@@ -303,11 +303,11 @@
  						\legend{$f$,$g$,$h$}
  					\end{axis}
  				\end{tikzpicture}
-
+ 				 				 				
  				Note that
  				\begin{align*}
  					f(x)\rightarrow-\infty                         & \text{ as } x\rightarrow\infty  \\
- 					\mathllap{\text{and }}   f(x)\rightarrow\infty & \text{ as } x\rightarrow-\infty
+ 					\mathllap{\text{and }}   f(x)\rightarrow\infty & \text{ as } x\rightarrow-\infty 
  				\end{align*}
  				The same is true for $g$ and $h$.
  			\end{shortsolution}
@@ -317,7 +317,7 @@
  			\begin{shortsolution}
  				The functions $F$, $G$, and $H$ have domain $(-\infty,\infty)$ and
  				are graphed below.
-
+ 				 				 				
  				\begin{tikzpicture}
  					\begin{axis}[
  							framed,
@@ -335,11 +335,11 @@
  						\legend{$F$,$G$,$H$}
  					\end{axis}
  				\end{tikzpicture}
-
+ 				 				 				
  				Note that
  				\begin{align*}
  					F(x)\rightarrow-\infty                          & \text{ as } x\rightarrow\infty  \\
- 					\mathllap{\text{and }}   F(x)\rightarrow-\infty & \text{ as } x\rightarrow-\infty
+ 					\mathllap{\text{and }}   F(x)\rightarrow-\infty & \text{ as } x\rightarrow-\infty 
  				\end{align*}
  				The same is true for $G$ and $H$.
  			\end{shortsolution}
@@ -346,7 +346,7 @@
  		\end{subproblem}
  		\end{problem}
  	\end{doyouunderstand}
-
+ 	 	 	
  \subsection*{Polynomial functions}
  	Now that we have a little more familiarity with power functions,
  	we can define polynomial functions. Provided that you were comfortable
@@ -357,7 +357,7 @@
  	and quadratic functions. Once you've studied the examples and problems
  	in this section, you'll hopefully agree that polynomial functions
  	are remarkably predictable.
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -376,11 +376,11 @@
  		\end{itemize}
  		In particular, we call $a_n$ the \emph{leading} coefficient, and $a_nx^n$ the
  		\emph{leading term}.
-
+ 		 		 		
  		Note that if a polynomial is given in factored form, then the degree can be found
  		by counting the number of linear factors.
  	\end{pccdefinition}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   March 2012
@@ -416,7 +416,7 @@
  			\end{enumerate}
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   March 2012
@@ -440,7 +440,7 @@
  			      shape and long-run behavior to the functions described in \cref{poly:ex:oddpow}.
  		\end{itemize}
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -536,7 +536,7 @@
  		\caption{Graphs to illustrate typical curves of polynomial functions.}
  		\label{poly:fig:typical}
  	\end{figure}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   March 2012
@@ -550,7 +550,7 @@
  		to guide you.
  		\begin{shortsolution}
  			$a_1<0$:
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -563,9 +563,9 @@
  					\addplot expression[domain=-10:8]{-(x+2)};
  				\end{axis}
  			\end{tikzpicture}
-
+ 			 			 			
  			$a_2<0$
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -578,9 +578,9 @@
  					\addplot expression[domain=-4:4]{-(x^2-6)};
  				\end{axis}
  			\end{tikzpicture}
-
+ 			 			 			
  			$a_3<0$
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -593,9 +593,9 @@
  					\addplot expression[domain=-7.5:7.5]{-0.05*(x+6)*x*(x-6)};
  				\end{axis}
  			\end{tikzpicture}
-
+ 			 			 			
  			$a_4<0$
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -608,9 +608,9 @@
  					\addplot expression[domain=-2.35:5.35,samples=100]{-0.2*(x-5)*x*(x-3)*(x+2)};
  				\end{axis}
  			\end{tikzpicture}
-
+ 			 			 			
  			$a_5<0$
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -626,11 +626,11 @@
  		\end{shortsolution}
  		\end{problem}
  	\end{doyouunderstand}
-
+ 	 	 	
  	\fixthis{poly: Need a more basic example here- it can have a similar
  		format to the multiple zeros example, but just keep it simple; it should
  	be halfway between the 2 examples surrounding it}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -642,7 +642,7 @@
  		\begin{align*}
  			p(x) & =(x-3)^2(x+4)^2       \\
  			q(x) & =x(x+2)^2(x-1)^2(x-3) \\
- 			r(x) & =x(x-3)^3(x+1)^2
+ 			r(x) & =x(x-3)^3(x+1)^2      
  		\end{align*}
  		Find the degree of $p$, $q$, and $r$, and decide if the functions bounce off or cut
  		through the horizontal axis at each of their zeros.
@@ -649,17 +649,17 @@
  		\begin{pccsolution}
  			The degree of $p$ is 4. Referring to \cref{poly:fig:bouncep},
  			the curve bounces off the horizontal axis at both zeros, $3$ and $4$.
-
+ 			 			 			
  			The degree of $q$ is 6. Referring to \cref{poly:fig:bounceq},
  			the curve bounces off the horizontal axis at $-2$ and $1$, and cuts
  			through the horizontal axis at $0$ and $3$.
-
+ 			 			 			
  			The degree of $r$ is 6. Referring to \cref{poly:fig:bouncer},
  			the curve bounces off the horizontal axis at $-1$, and cuts through
  			the horizontal axis at $0$ and at $3$, although is flattened immediately to the left and right of $3$.
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	\setlength{\figurewidth}{0.25\textwidth}
  	\begin{figure}[!htb]
  		\begin{subfigure}{\figurewidth}
@@ -712,7 +712,7 @@
  		\caption{}
  		\label{poly:fig:moremultiple}
  	\end{figure}
-
+ 	 	 	
  	\begin{pccdefinition}[Multiple zeros]\label{poly:def:multzero}
  		Let $p$ be a polynomial that has a repeated linear factor $(x-a)^n$. Then we say
  		that $p$ has a multiple zero at $a$ of multiplicity $n$ and
@@ -724,7 +724,7 @@
  		\end{itemize}
  		If $n=1$, then we say that $p$ has a \emph{simple} zero at $a$.
  	\end{pccdefinition}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -786,7 +786,7 @@
  				      Let's check if the formula we have written satisfies this requirement
  				      \begin{align*}
  				      	p(1) & = (1)(4)(2)(-1) \\
- 				      	     & = -8
+ 				      	     & = -8            
  				      \end{align*}
  				      which is clearly not correct| it is close though. We can correct this by
  				      multiplying $p$ by a constant $k$; so let's assume that
@@ -807,7 +807,7 @@
  				      evaluate $p(2)$
  				      \begin{align*}
  				      	p(2) & =k(4)^2(-1) \\
- 				      	     & =-16k
+ 				      	     & =-16k       
  				      \end{align*}
  				      We solve the equation $4=-8k$ and obtain $k=-\frac{1}{4}$ and conclude that the
  				      formula for $q(x)$ is
@@ -817,8 +817,8 @@
  			\end{enumerate}
  		\end{pccsolution}
  	\end{pccexample}
-
-
+ 	 	 	
+ 	 	 	
  	\fixthis{Chris: need sketching polynomial problems}
  	\begin{pccspecialcomment}[Steps to follow when sketching polynomial functions]
  		\begin{steps}
@@ -865,12 +865,12 @@
  				\item We draw the details we have obtained so far on \cref{poly:fig:simplecubicp1}. Given
  				that the curve of $p$ looks like the curve of $x^3$ in the long-run, we are able to complete a sketch of the
  				graph of $p$ in \cref{poly:fig:simplecubicp2}.
-
+ 				 				 				
  				Note that we can not find the coordinates of the local minimums, local maximums, and inflection
  				points| for the moment we make reasonable guesses as to where these points are (you'll find how
  				to do this in calculus).
  			\end{steps}
-
+ 			 			 			
  			\begin{figure}[!htbp]
  				\begin{subfigure}{.45\textwidth}
  					\begin{tikzpicture}
@@ -909,7 +909,7 @@
  			\end{figure}
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2012
@@ -934,7 +934,7 @@
  				\item We mark the details we have found so far on \cref{poly:fig:degree5p1}. Given that
  				the curve of $q$ looks like the curve of $-x^5$ in the long-run, we can complete \cref{poly:fig:degree5p2}.
  			\end{steps}
-
+ 			 			 			
  			\begin{figure}[!htbp]
  				\begin{subfigure}{.45\textwidth}
  					\begin{tikzpicture}
@@ -973,7 +973,7 @@
  			\end{figure}
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2012
@@ -1000,7 +1000,7 @@
  				the curve of $r$ looks like the curve of $x^6$ in the long-run, we complete the graph
  				of $r$ in \cref{poly:fig:degree6p2}.
  			\end{steps}
-
+ 			 			 			
  			\begin{figure}[!htbp]
  				\begin{subfigure}{.45\textwidth}
  					\begin{tikzpicture}
@@ -1038,7 +1038,7 @@
  			\end{figure}
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   March 2012
@@ -1058,7 +1058,7 @@
  			$x$ represents the length of a side, and $V(x)$ represents the volume
  			of the box, we necessarily require both values to be positive; we illustrate
  			the part of the curve that applies to this problem using a solid line.
-
+ 			 			 			
  			\begin{figure}[!htb]
  				\centering
  				\begin{tikzpicture}
@@ -1080,7 +1080,7 @@
  				\caption{$y=V(x)$}
  				\label{poly:fig:opentoppedbox}
  			\end{figure}
-
+ 			 			 			
  			According to \cref{poly:fig:opentoppedbox}, the maximum volume of such a box is
  			approximately $\unit[4000]{cm^2}$, and we achieve it using a base of length
  			approximately $\unit[20]{cm}$. Since the base is square and each sheet of cardboard
@@ -1087,7 +1087,7 @@
  			is $\unit[1200]{cm^2}$, we conclude that the dimensions of each box are $\unit[20]{cm}\times\unit[20]{cm}\times\unit[30]{cm}$.
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  \subsection*{Complex zeros}
  	There has been a pattern to all of the examples that we have seen so far|
  	the degree of the polynomial has dictated the number of \emph{real} zeros that the
@@ -1094,7 +1094,7 @@
  	polynomial has. For example, the function $p$ in \cref{poly:ex:simplecubic}
  	has degree $3$, and $p$ has $3$ real zeros; the function $q$ in \cref{poly:ex:degree5}
  	has degree $5$ and $q$ has $5$ real zeros.
-
+ 	 	 	
  	You may wonder if this result can be generalized| does every polynomial that
  	has degree $n$ have $n$ real zeros? Before we tackle the general result,
  	let's consider an example that may help motivate it.
@@ -1113,7 +1113,7 @@
  			x^2+1=0
  		\end{equation}
  		The solutions to \cref{poly:eq:complx} are $\pm i$.
-
+ 		 		 		
  		We conclude that $c$ has $3$ zeros: $0$ and $\pm i$; we note that \emph{not
  		all of them are real}.
  	\end{pccexample}
@@ -1143,7 +1143,7 @@
  			We begin by factoring $p$
  			\begin{align*}
  				p(x) & =x^4-2x^3+5x^2 \\
- 				     & =x^2(x^2-2x+5)
+ 				     & =x^2(x^2-2x+5) 
  			\end{align*}
  			We note that $0$ is a zero of $p$ with multiplicity $2$. The other zeros of $p$
  			can be found by solving the equation
@@ -1154,7 +1154,7 @@
  			\begin{align*}
  				x & =\frac{2\pm\sqrt{(-2)^2}-20}{2(1)} \\
  				  & =\frac{2\pm\sqrt{-16}}{2}          \\
- 				  & =1\pm 2i
+ 				  & =1\pm 2i                           
  			\end{align*}
  			We conclude that $p$ has $4$ zeros: $0$ (multiplicity $2$), and $1\pm 2i$ (simple).
  		\end{pccsolution}
@@ -1169,13 +1169,13 @@
  			We know that the zeros of a polynomial can be found by analyzing the linear
  			factors. We are given the zeros, and have to work backwards to find the
  			linear factors.
-
+ 			 			 			
  			We begin by assuming that $p$ has the form
  			\begin{align*}
  				p(x) & =(x-(2-i\sqrt{2}))(x-(2+i\sqrt{2}))                           \\
  				     & =x^2-x(2+i\sqrt{2})-x(2-i\sqrt{2})+(2-i\sqrt{2})(2+i\sqrt{2}) \\
  				     & =x^2-4x+(4-2i^2)                                              \\
- 				     & =x^2-4x+6
+ 				     & =x^2-4x+6                                                     
  			\end{align*}
  			We conclude that a possible formula for a polynomial function, $p$,
  			that has zeros at $2\pm i\sqrt{2}$ is
@@ -1235,8 +1235,8 @@
  		\end{enumerate}
  	\end{shortsolution}
  	\end{problem}
-
-
+ 	 	 	
+ 	 	 	
  	\begin{figure}[!htb]
  		\setlength{\figurewidth}{0.3\textwidth}
  		\begin{subfigure}{\figurewidth}
@@ -1287,10 +1287,10 @@
  		\caption{}
  		\label{poly:fig:findformula}
  	\end{figure}
-
-
-
-
+ 	 	 	
+ 	 	 	
+ 	 	 	
+ 	 	 	
  	\begin{exercises}
  	%===================================
  	%   Author: Hughes
@@ -1459,7 +1459,7 @@
  	\begin{align*}
  		p(x) & = (x-1)(x+2)(x-3)           \\
  		m(x) & = -(x-1)(x+2)(x-3)          \\
- 		n(x) & = (x-1)(x+2)(x-3)(x+1)(x+4)
+ 		n(x) & = (x-1)(x+2)(x-3)(x+1)(x+4) 
  	\end{align*}
  	Note that for our present purposes we are not concerned with the vertical scale of the graphs.
  	\begin{subproblem}
@@ -1466,7 +1466,7 @@
  		Identify both on the graph {\em and} algebraically, the zeros of each polynomial.
  		\begin{shortsolution}
  			$y=p(x)$ is shown below.
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						xmin=-5,xmax=5,
@@ -1477,9 +1477,9 @@
  					\addplot[soldot] coordinates{(-2,0)(1,0)(3,0)};
  				\end{axis}
  			\end{tikzpicture}
-
+ 			 			 			
  			$y=m(x)$ is shown below.
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						xmin=-5,xmax=5,
@@ -1490,9 +1490,9 @@
  					\addplot[soldot] coordinates{(-2,0)(1,0)(3,0)};
  				\end{axis}
  			\end{tikzpicture}
-
+ 			 			 			
  			$y=n(x)$ is shown below.
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						xmin=-5,xmax=5,
@@ -1503,7 +1503,7 @@
  					\addplot[soldot] coordinates{(-4,0)(-2,0)(-1,0)(1,0)(3,0)};
  				\end{axis}
  			\end{tikzpicture}
-
+ 			 			 			
  			The zeros of $p$ are $-2$, $1$, and $3$; the zeros of $m$ are $-2$, $1$, and $3$; the zeros of $n$ are
  			$-4$, $-2$, $-1$, and $3$.
  		\end{shortsolution}
@@ -1520,7 +1520,7 @@
  		\end{shortsolution}
  	\end{subproblem}
  	\end{problem}
-
+ 	 	 	
  	\begin{figure}[!htb]
  		\begin{widepage}
  		\setlength{\figurewidth}{0.3\textwidth}
@@ -1773,7 +1773,7 @@
  		\end{shortsolution}
  	\end{subproblem}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -1792,7 +1792,7 @@
  		$\dd\lim_{x\rightarrow\infty}s(x)=\infty$,
  	\end{shortsolution}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -1917,7 +1917,7 @@
  		is positive.
  		\begin{shortsolution}
  			Assuming that $a_3>0$:
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						xmin=-10,xmax=10,
@@ -1937,7 +1937,7 @@
  		is negative.
  		\begin{shortsolution}
  			Assuming that $a_3<0$:
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						xmin=-10,xmax=10,
@@ -1961,7 +1961,7 @@
  		coefficient of $q$ is positive. Hint: only one of the zeros is simple.
  		\begin{shortsolution}
  			Assuming that $a_4>0$ there are $2$ different options:
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						xmin=-10,xmax=10,
@@ -1982,7 +1982,7 @@
  		coefficient of $q$ is negative.
  		\begin{shortsolution}
  			Assuming that $a_4<0$ there are $2$ different options:
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						xmin=-10,xmax=10,
@@ -2194,7 +2194,7 @@
  		\end{subproblem}
  	\end{multicols}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   July 2012
@@ -2238,7 +2238,7 @@
  		\end{shortsolution}
  	\end{subproblem}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   July 2012
@@ -2290,7 +2290,7 @@
  		\end{subproblem}
  	\end{multicols}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -2298,7 +2298,7 @@
  	\begin{problem}[Find a formula from a table]\label{poly:prob:findformula}
  	\Crefrange{poly:tab:findformulap}{poly:tab:findformulas} show values of polynomial functions, $p$, $q$,
  	$r$, and $s$.
-
+ 	 	 	
  	\begin{table}[!htb]
  		\centering
  		\begin{widepage}
@@ -2382,7 +2382,7 @@
  		\end{subtable}
  		\end{widepage}
  	\end{table}
-
+ 	 	 	
  	\begin{subproblem}
  		Assuming that all of the zeros of $p$ are shown (in \cref{poly:tab:findformulap}), how many zeros does $p$ have?
  		\begin{shortsolution}
@@ -2433,7 +2433,7 @@
  	\end{subproblem}
  	\end{problem}
  	\end{exercises}
-
+ 	 	 	
 \section{Rational functions}
  \subsection*{Power functions with negative exponents}
  	The study of rational functions will rely upon a good knowledge
@@ -2455,21 +2455,21 @@
  			the long-run behavior of each of the functions is the same, and in particular
  			\begin{align*}
  				f(x)\rightarrow 0                         & \text{ as } x\rightarrow\infty  \\
- 				\mathllap{\text{and }}  f(x)\rightarrow 0 & \text{ as } x\rightarrow-\infty
+ 				\mathllap{\text{and }}  f(x)\rightarrow 0 & \text{ as } x\rightarrow-\infty 
  			\end{align*}
  			The same results hold for $g$ and $h$. Note also that each of the functions
  			has a \emph{vertical asymptote} at $0$. We see that
  			\begin{align*}
  				f(x)\rightarrow -\infty                         & \text{ as } x\rightarrow 0^- \\
- 				\mathllap{\text{and }}   f(x)\rightarrow \infty & \text{ as } x\rightarrow 0^+
+ 				\mathllap{\text{and }}   f(x)\rightarrow \infty & \text{ as } x\rightarrow 0^+ 
  			\end{align*}
  			The same results hold for $g$ and $h$.
-
+ 			 			 			
  			The curve of a function that has a vertical asymptote is necessarily separated
  			into \emph{branches}| each of the functions $f$, $g$, and $h$ have $2$ branches.
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	\begin{figure}[!htb]
  		\begin{minipage}{.45\textwidth}
  			\begin{tikzpicture}
@@ -2525,8 +2525,8 @@
  			\label{rat:fig:evenpow}
  		\end{minipage}%
  	\end{figure}
-
-
+ 	 	 	
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -2543,7 +2543,7 @@
  			the long-run behavior of each of the functions is the same, and in particular
  			\begin{align*}
  				F(x)\rightarrow 0                           & \text{ as } x\rightarrow\infty  \\
- 				\mathllap{\text{and }}    f(x)\rightarrow 0 & \text{ as } x\rightarrow-\infty
+ 				\mathllap{\text{and }}    f(x)\rightarrow 0 & \text{ as } x\rightarrow-\infty 
  			\end{align*}
  			As in \cref{rat:ex:oddpow}, $F$ has a horizontal asymptote  that
  			has equation $y=0$.
@@ -2551,7 +2551,7 @@
  			has a \emph{vertical asymptote} at $0$. We see that
  			\begin{align*}
  				F(x)\rightarrow \infty                          & \text{ as } x\rightarrow 0^- \\
- 				\mathllap{\text{and }}   F(x)\rightarrow \infty & \text{ as } x\rightarrow 0^+
+ 				\mathllap{\text{and }}   F(x)\rightarrow \infty & \text{ as } x\rightarrow 0^+ 
  			\end{align*}
  			The same results hold for $G$ and $H$. Each of the functions $F$, $G$, and $H$
  			have $2$ branches.
@@ -2569,7 +2569,7 @@
  			\begin{shortsolution}
  				The functions $k$, $m$, and $n$ have domain $(-\infty,0)\cup (0,\infty)$, and
  				are graphed below.
-
+ 				 				 				
  				\begin{tikzpicture}
  					\begin{axis}[
  							framed,
@@ -2590,7 +2590,7 @@
  						\legend{$k$,$m$,$n$}
  					\end{axis}
  				\end{tikzpicture}
-
+ 				 				 				
  				Note that
  				\begin{align*}
  					k(x)\rightarrow 0                                & \text{ as } x\rightarrow\infty  \\
@@ -2597,7 +2597,7 @@
  					\mathllap{\text{and }}    k(x)\rightarrow 0      & \text{ as } x\rightarrow-\infty \\
  					\intertext{and also}
  					k(x)\rightarrow \infty                           & \text{ as } x\rightarrow 0^-    \\
- 					\mathllap{\text{and }}   k(x)\rightarrow -\infty & \text{ as } x\rightarrow 0^+
+ 					\mathllap{\text{and }}   k(x)\rightarrow -\infty & \text{ as } x\rightarrow 0^+    
  				\end{align*}
  				The same are true for $m$ and $n$.
  			\end{shortsolution}
@@ -2607,7 +2607,7 @@
  			\begin{shortsolution}
  				The functions $K$, $M$, and $N$ have domain $(-\infty,0)\cup (0,\infty)$, and
  				are graphed below.
-
+ 				 				 				
  				\begin{tikzpicture}
  					\begin{axis}[
  							framed,
@@ -2628,7 +2628,7 @@
  						\legend{$K$,$M$,$N$}
  					\end{axis}
  				\end{tikzpicture}
-
+ 				 				 				
  				Note that
  				\begin{align*}
  					K(x)\rightarrow 0                                & \text{ as } x\rightarrow\infty  \\
@@ -2635,7 +2635,7 @@
  					\mathllap{\text{and }}    K(x)\rightarrow 0      & \text{ as } x\rightarrow-\infty \\
  					\intertext{and also}
  					K(x)\rightarrow -\infty                          & \text{ as } x\rightarrow 0^-    \\
- 					\mathllap{\text{and }}   K(x)\rightarrow -\infty & \text{ as } x\rightarrow 0^+
+ 					\mathllap{\text{and }}   K(x)\rightarrow -\infty & \text{ as } x\rightarrow 0^+    
  				\end{align*}
  				The same are true for $M$ and $N$.
  			\end{shortsolution}
@@ -2642,7 +2642,7 @@
  		\end{subproblem}
  		\end{problem}
  	\end{doyouunderstand}
-
+ 	 	 	
  \subsection*{Rational functions}
  	\begin{pccdefinition}[Rational functions]\label{rat:def:function}
  		Rational functions have the form
@@ -2650,7 +2650,7 @@
  			r(x) = \frac{p(x)}{q(x)}
  		\]
  		where both $p$ and $q$ are polynomials.
-
+ 		 		 		
  		Note that
  		\begin{itemize}
  			\item the domain or $r$ will be all real numbers, except those that
@@ -2658,13 +2658,13 @@
  			\item the zeros of $r$ are the zeros of $p$, i.e the real numbers
  			      that make the \emph{numerator}, $p(x)$, equal to $0$.
  		\end{itemize}
-
+ 		 		 		
  		\Cref{rat:ex:oddpow,rat:ex:evenpow} are particularly important because $r$
  		will behave like $\frac{1}{x}$, or $\frac{1}{x^2}$ around its vertical asymptotes,
  		depending on the power that the relevant term is raised to| we will demonstrate
  		this in what follows.
  	\end{pccdefinition}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -2699,7 +2699,7 @@
  			\end{enumerate}
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -2779,7 +2779,7 @@
  			\caption{}
  			\label{rat:fig:whichiswhich}
  		\end{figure}
-
+ 		 		 		
  		\begin{pccsolution}
  			Let's start with the function $r$. Note that domain of $r$ is $(-\infty,3)\cup(0,3)$, so
  			we search for a function that has a vertical asymptote at $3$. There
@@ -2787,18 +2787,18 @@
  			but note that the function in \cref{rat:fig:which3} also has a vertical asymptote at $-2$
  			which is not consistent with the formula for $r(x)$. Therefore, $y=r(x)$
  			is graphed in \cref{rat:fig:which2}.
-
+ 			 			 			
  			The function $q$ has domain $(-\infty,-5)\cup(-5,\infty)$, so we search
  			for a function that has a vertical asymptote at $-5$. The only candidate
  			is the curve shown in \cref{rat:fig:which1}; note that the curve also goes through $(2,0)$,
  			which is consistent with the formula for $q(x)$, since $q(2)=0$, i.e $q$
  			has a zero at $2$.
-
+ 			 			 			
  			The function $k$ has domain $(-\infty,-2)\cup(-2,3)\cup(3,\infty)$, and
  			has vertical asymptotes at $-2$ and $3$. This is consistent with
  			the graph in \cref{rat:fig:which3} (and is the only curve that
  			has $3$ branches).
-
+ 			 			 			
  			We note that each function behaves like $\frac{1}{x}$ around its vertical asymptotes,
  			because each linear factor in each denominator is raised to the power $1$; if (for example)
  			the definition of $r$ was instead
@@ -2809,7 +2809,7 @@
  			the graph of $r$ would be very different. We will deal with these cases in the examples that follow.
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -2827,7 +2827,7 @@
  		so we are not surprised to see that each curve has $3$ branches. We also note that
  		the numerator of each function is the same, which tells us that each function has
  		only $1$ zero at $2$.
-
+ 		 		 		
  		The functions $g$ and $h$ are different from those that we have considered previously,
  		because they have a repeated factor in the denominator. Notice in particular
  		the way that the functions behave around their asymptotes:
@@ -2910,7 +2910,7 @@
  		\caption{}
  		\label{rat:fig:repfactd}
  	\end{figure}
-
+ 	 	 	
  	\Cref{rat:def:function} says that the zeros of
  	the rational function $r$ that has formula $r(x)=\frac{p(x)}{q(x)}$ are
  	the zeros of $p$. Let's explore this a little more.
@@ -2929,9 +2929,9 @@
  				x+5=0
  			\]
  			The zero of $\alpha$ is $-5$.
-
+ 			 			 			
  			Similarly, we may solve $9-x=0$ to find the zero of $\beta$, which is clearly $9$.
-
+ 			 			 			
  			The zeros of $\gamma$ satisfy the equation
  			\[
  				17x^2-10=0
@@ -2943,7 +2943,7 @@
  			The zeros of $\gamma$ are $\pm\frac{10}{17}$.
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  \subsection*{Long-run behavior}
  	Our focus so far has been on the behavior of rational functions around
  	their \emph{vertical} asymptotes. In fact, rational functions also
@@ -2966,7 +2966,7 @@
  	\end{pccdefinition}
  	We will concentrate on functions that have horizontal asymptotes until
  	we reach \cref{rat:sec:oblique}.
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2012
@@ -2979,7 +2979,7 @@
  		and obtained the curves shown in \cref{rat:fig:horizasymp}. Kebede decides
  		to test his knowledgeable friend \pccname{Oscar}, and asks him
  		to match the formulas to the graphs.
-
+ 		 		 		
  		\begin{figure}[!htb]
  			\setlength{\figurewidth}{0.3\textwidth}
  			\begin{subfigure}{\figurewidth}
@@ -3050,7 +3050,7 @@
  			\caption{Horizontal asymptotes}
  			\label{rat:fig:horizasymp}
  		\end{figure}
-
+ 		 		 		
  		Oscar notices that each function has a vertical asymptote at $3$ and a zero at $-1$.
  		The main thing that catches Oscar's eye is that each function has a different
  		coefficient in the numerator, and that each curve has a different horizontal asymptote.
@@ -3064,7 +3064,7 @@
  		that since the degree of the numerator and the degree of the denominator is the same
  		for each of the functions $r$, $s$, and $t$, the horizontal asymptote will be determined
  		by evaluating the ratio of their leading coefficients.
-
+ 		 		 		
  		Oscar therefore says that $r$ should have a horizontal asymptote $y=\frac{1}{1}=1$, $s$ should
  		have a horizontal asymptote $y=\frac{2}{1}=2$, and $t$ should have a horizontal asymptote
  		$y=\frac{3}{1}=3$. Kebede is able to finish the problem from here, and says that $r$ is
@@ -3071,7 +3071,7 @@
  		shown in \cref{rat:fig:horizasymp2}, $s$ is shown in \cref{rat:fig:horizasymp1}, and
  		$t$ is shown in \cref{rat:fig:horizasymp3}.
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2012
@@ -3080,7 +3080,7 @@
  		\pccname{Xiao} and \pccname{Dwayne} saw \cref{rat:ex:horizasymp} but are a little confused
  		about horizontal asymptotes. What does it mean to say that a function $r$ has a horizontal
  		asymptote?
-
+ 		 		 		
  		They decide to explore the concept by
  		constructing a table of values for the rational functions $R$ and  $S$ that have formulas
  		\[
@@ -3119,13 +3119,13 @@
  				\end{tabular}
  			\end{minipage}
  		\end{table}
-
+ 		 		 		
  		Xiao and Dwayne study \cref{rat:tab:plusinfty,rat:tab:minusinfty} and decide that
  		the functions $R$ and $S$ never actually touch their horizontal asymptotes, but they
  		do get infinitely close. They also feel as if they have a better understanding of
  		what it means to study the behavior of a function as $x\rightarrow\pm\infty$.
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -3142,7 +3142,7 @@
  		\]
  		We also notice that the numerators of each function are quite similar| indeed, each
  		function has a zero at $2$, but how does each function behave around their zero?
-
+ 		 		 		
  		Using \cref{rat:fig:repfactn} to guide us, we note that
  		\begin{itemize}
  			\item $f$ has a horizontal intercept $(2,0)$, but the curve of
@@ -3152,7 +3152,7 @@
  			\item $h$ has a horizontal intercept $(2,0)$, and the curve of $h$
  			      also cuts the axis, but appears flattened as it does so.
  		\end{itemize}
-
+ 		 		 		
  		We can further enrich our study by discussing the long-run behavior of each function.
  		Using the tools of \cref{rat:def:longrun}, we can deduce that
  		\begin{itemize}
@@ -3162,7 +3162,7 @@
  			      study this more in \cref{rat:sec:oblique}).
  		\end{itemize}
  	\end{pccexample}
-
+ 	 	 	
  	\begin{figure}[!htb]
  		\setlength{\figurewidth}{0.3\textwidth}
  		\begin{subfigure}{\figurewidth}
@@ -3235,7 +3235,7 @@
  		\caption{}
  		\label{rat:fig:repfactn}
  	\end{figure}
-
+ 	 	 	
  \subsection*{Holes}
  	Rational functions have a vertical asymptote at $a$ if the denominator is $0$ at $a$.
  	What happens if the numerator is $0$ at the same place? In this case, we say that the rational
@@ -3250,7 +3250,7 @@
  		$(a,r(a))$ on the curve $y=r(x)$ by
  		using a hollow circle, $\circ$.
  	\end{pccdefinition}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   March 2012
@@ -3262,12 +3262,12 @@
  		\]
  		in their calculators, and can not decide if the correct graph
  		is \cref{rat:fig:hole} or \cref{rat:fig:hole1}.
-
+ 		 		 		
  		Luckily for them, Oscar is nearby, and can help them settle the debate.
  		Oscar demonstrates that
  		\begin{align*}
  			r(x) & =\frac{(x+3)(x-2)}{(x-2)} \\
- 			     & = x+3
+ 			     & = x+3                     
  		\end{align*}
  		but only when $x\ne 2$, because the function is undefined at $2$. Oscar
  		says that this necessarily means that the domain or $r$ is
@@ -3275,7 +3275,7 @@
  			(-\infty,2)\cup(2,\infty)
  		\]
  		and that $r$ must have a hole at $2$.
-
+ 		 		 		
  		Mohammed and Sue are very grateful for the clarification, and conclude that
  		the graph of $r$ is shown in \cref{rat:fig:hole1}.
  		\begin{figure}[!htb]
@@ -3319,7 +3319,7 @@
  			\end{minipage}%
  		\end{figure}
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -3333,12 +3333,12 @@
  		make the denominator equal to $0$. Notice that
  		\begin{align*}
  			f(x) & = \frac{x(x+3)}{x(x-4)} \\
- 			     & = \frac{x+3}{x-4}
+ 			     & = \frac{x+3}{x-4}       
  		\end{align*}
  		provided that $x\ne 0$. Since $0$ makes the numerator
  		and the denominator 0 at the same time, we say that $f$ has a hole at $(0,-\nicefrac{3}{4})$.
  		Note that this necessarily means that $f$ does not have a vertical intercept.
-
+ 		 		 		
  		We also note $f$ has a vertical asymptote at $4$; the function is graphed in \cref{rat:fig:holeex}.
  		\begin{figure}[!htb]
  			\centering
@@ -3362,9 +3362,9 @@
  			\label{rat:fig:holeex}
  		\end{figure}
  	\end{pccexample}
-
-
-
+ 	 	 	
+ 	 	 	
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   March 2012
@@ -3374,7 +3374,7 @@
  		if a rational function has a vertical asymptote, then it can
  		not possibly have local minimums and maximums, nor can it have
  		global minimums and maximums.
-
+ 		 		 		
  		Trang says this statement is not always true. She plots the functions
  		$f$ and $g$ that have formulas
  		\[
@@ -3383,7 +3383,7 @@
  		in \cref{rat:fig:minmax1,rat:fig:minmax2} and shows them to Seamus. On seeing the graphs,
  		Seamus quickly corrects himself, and says  that $f$ has a local (and global)
  		maximum of $2$ at $0$, and that $g$ has a local (and global) minimum of $-2$ at $0$.
-
+ 		 		 		
  		\begin{figure}[!htb]
  			\begin{minipage}{.45\textwidth}
  				\begin{tikzpicture}[/pgf/declare function={f=-32*(x-1)*(x+1)/(( x-2)^2*(x+2)^2);}]
@@ -3427,19 +3427,19 @@
  				\label{rat:fig:minmax2}
  			\end{minipage}%
  		\end{figure}
-
+ 		 		 		
  		Seamus also notes that (in its domain) the function $f$ is always concave down, and
  		that (in its domain) the function $g$ is always concave up. Furthermore, Trang
  		observes that each function behaves like $\frac{1}{x^2}$ around each of its vertical
  		asymptotes, because each linear factor in the denominator is raised to the power $2$.
-
+ 		 		 		
  		\pccname{Oscar} stops by and reminds both students about the long-run behavior; according
  		to \cref{rat:def:longrun} since the degree of the denominator is greater than the
  		degree of the numerator (in both functions), each function has a horizontal asymptote
  		at $y=0$.
  	\end{pccexample}
-
-
+ 	 	 	
+ 	 	 	
  	\investigation*{}
  	%===================================
  	%   Author: Pettit/Hughes
@@ -3448,12 +3448,12 @@
  	\begin{problem}[The spaghetti incident]
  	The same Queen from \vref{exp:prob:queenschessboard} has recovered from
  	the rice experiments, and has called her loyal jester for another challenge.
-
+ 	 	 	
  	The jester has an $11-$inch piece of uncooked spaghetti that he puts on a table;
  	he uses a book to cover $\unit[1]{inch}$ of it so that
  	$\unit[10]{inches}$ hang over the edge. The jester then produces a box of $\unit{mg}$
  	weights that can be hung from the spaghetti.
-
+ 	 	 	
  	The jester says it will take $\unit[y]{mg}$ to break the spaghetti when hung
  	$\unit[x]{inches}$ from the edge, according to the rule $y=\frac{100}{x}$.
  	\begin{margintable}
@@ -3537,7 +3537,7 @@
  		note that this necessarily means that you will not be able to plot all of the points.
  		\begin{shortsolution}
  			The graph of $y=\frac{100}{x}$ is shown below.
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -3567,9 +3567,9 @@
  	\end{subproblem}
  	The Queen looks forward to more food-related investigations from her jester.
  	\end{problem}
-
-
-
+ 	 	 	
+ 	 	 	
+ 	 	 	
  	%===================================
  	%   Author: Adams (Hughes)
  	%   Date:   March 2012
@@ -3593,17 +3593,17 @@
  			Paying off the debt in $2$ years, we use
  			\begin{align*}
  				M & = \frac{2000\cdot 0.015}{1-(1+0.015)^{-24}} \\
- 				  & \approx 99.85
+ 				  & \approx 99.85                               
  			\end{align*}
  			The monthly payments are \$99.85.
-
+ 			 			 			
  			Paying off the debt in $1$ year, we use
  			\begin{align*}
  				M & = \frac{2000\cdot 0.015}{1-(1+0.015)^{-12}} \\
- 				  & \approx 183.36
+ 				  & \approx 183.36                              
  			\end{align*}
  			The monthly payments are \$183.36
-
+ 			 			 			
  			In the $2$-year model we would pay a total of $\$99.85\cdot 12=\$2396.40$. In the
  			$1$-year model we would pay a total of $\$183.36\cdot 12=\$2200.32$. We would therefore
  			save $\$196.08$ if we went with the $1$-year model instead of the $2$-year model.
@@ -3619,20 +3619,20 @@
  			For the $20$-year loan we use
  			\begin{align*}
  				M & = \frac{300000\cdot \frac{0.052}{12}}{1-\left( 1+\frac{0.052}{12} \right)^{-12\cdot 20}} \\
- 				  & \approx 2013.16
+ 				  & \approx 2013.16                                                                          
  			\end{align*}
  			The monthly payments are \$2013.16.
-
+ 			 			 			
  			For the $30$-year loan we use
  			\begin{align*}
  				M & = \frac{300000\cdot \frac{0.052}{12}}{1-\left( 1+\frac{0.052}{12} \right)^{-12\cdot 30}} \\
- 				  & \approx 1647.33
+ 				  & \approx 1647.33                                                                          
  			\end{align*}
  			The monthly payments are \$1647.33.
-
+ 			 			 			
  			The total amount paid during the $20$-year loan is $\$2013.16\cdot 12\cdot 20=\$483,158.40$.
  			The total amount paid during the $30$-year loan is $\$1647.33\cdot 12\cdot 30=\$593,038.80$.
-
+ 			 			 			
  			Recommendation: if you can afford the payments, choose the $20$-year loan.
  		\end{shortsolution}
  	\end{subproblem}
@@ -3662,7 +3662,7 @@
  				This means that the monthly payments will be calculated using
  				\begin{align*}
  					M & = \frac{14000\cdot \frac{0.04}{12}}{1-\left( 1+\frac{0.04}{12} \right)^{-12\cdot 5}} \\
- 					  & \approx 257.83
+ 					  & \approx 257.83                                                                       
  				\end{align*}
  				The monthly payments will be $\$257.83$. The total amount paid will be
  				$\$257.83\cdot 5\cdot 12=\$15,469.80$, of which $\$1469.80$ is interest.
@@ -3670,7 +3670,7 @@
  				This means that the monthly payments will be calculated using
  				\begin{align*}
  					M & = \frac{12000\cdot \frac{0.08}{12}}{1-\left( 1+\frac{0.08}{12} \right)^{-12\cdot 5}} \\
- 					  & \approx 243.32
+ 					  & \approx 243.32                                                                       
  				\end{align*}
  				The monthly payments will be $\$243.32$. The total amount paid
  				will be $\$243.32\cdot 5\cdot 12 =\$14,599.20$, of which $\$2599.2$ is
@@ -3681,7 +3681,7 @@
  		\end{shortsolution}
  	\end{subproblem}
  	\end{problem}
-
+ 	 	 	
  	\begin{exercises}
  	%===================================
  	%   Author: Hughes
@@ -3783,7 +3783,7 @@
  				$\begin{aligned}[t]
  					r(0) & =\frac{(0-2)(0+3)}{(0+5)(0-7)} \\
  					     & =\frac{-6}{-35}                \\
- 					     & =\frac{6}{35}
+ 					     & =\frac{6}{35}                  
  				\end{aligned}$
  			\end{shortsolution}
  		\end{subproblem}
@@ -3793,7 +3793,7 @@
  				$\begin{aligned}[t]
  					r(1) & =\frac{(1-2)(1+3)}{(1+5)(1-7)} \\
  					     & =\frac{-4}{-36}                \\
- 					     & =\frac{1}{9}
+ 					     & =\frac{1}{9}                   
  				\end{aligned}$
  			\end{shortsolution}
  		\end{subproblem}
@@ -3803,7 +3803,7 @@
  				$\begin{aligned}[t]
  					r(2) & =\frac{(2-2)(2+3)}{(2+5)(2-7)} \\
  					     & = \frac{0}{-50}                \\
- 					     & =0
+ 					     & =0                             
  				\end{aligned}$
  			\end{shortsolution}
  		\end{subproblem}
@@ -3813,7 +3813,7 @@
  				$\begin{aligned}[t]
  					r(4) & =\frac{(4-2)(4+3)}{(4+5)(4-7)} \\
  					     & =\frac{14}{-27}                \\
- 					     & =-\frac{14}{27}
+ 					     & =-\frac{14}{27}                
  				\end{aligned}$
  			\end{shortsolution}
  		\end{subproblem}
@@ -3822,9 +3822,9 @@
  			\begin{shortsolution}
  				$\begin{aligned}[t]
  					r(7) & =\frac{(7-2)(7+3)}{(7+5)(7-7)} \\
- 					     & =\frac{50}{0}
+ 					     & =\frac{50}{0}                  
  				\end{aligned}$
-
+ 				 				 				
  				$r(7)$ is undefined.
  			\end{shortsolution}
  		\end{subproblem}
@@ -3834,7 +3834,7 @@
  				$\begin{aligned}[t]
  					r(-3) & =\frac{(-3-2)(-3+3)}{(-3+5)(-3-7)} \\
  					      & =\frac{0}{-20}                     \\
- 					      & =0
+ 					      & =0                                 
  				\end{aligned}$
  			\end{shortsolution}
  		\end{subproblem}
@@ -3843,9 +3843,9 @@
  			\begin{shortsolution}
  				$\begin{aligned}[t]
  					r(-5) & =\frac{(-5-2)(-5+3)}{(-5+5)(-5-7)} \\
- 					      & =\frac{14}{0}
+ 					      & =\frac{14}{0}                      
  				\end{aligned}$
-
+ 				 				 				
  				$r(-5)$ is undefined.
  			\end{shortsolution}
  		\end{subproblem}
@@ -3856,7 +3856,7 @@
  					r\left( \frac{1}{2} \right) & = \frac{\left( \frac{1}{2}-2 \right)\left( \frac{1}{2}+3 \right)}{\left( \frac{1}{2}+5 \right)\left( \frac{1}{2}-7 \right)} \\
  					                            & =\frac{-\frac{3}{2}\cdot\frac{7}{2}}{\frac{11}{2}\left( -\frac{13}{2} \right)}                                              \\
  					                            & =\frac{-\frac{21}{4}}{-\frac{143}{4}}                                                                                       \\
- 					                            & =\frac{37}{143}
+ 					                            & =\frac{37}{143}                                                                                                             
  				\end{aligned}$
  			\end{shortsolution}
  		\end{subproblem}
@@ -3908,7 +3908,7 @@
  		\end{subproblem}
  	\end{multicols}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -3925,7 +3925,7 @@
  		\end{itemize}
  	\end{shortsolution}
  	\end{problem}
-
+ 	 	 	
  	\begin{figure}[!htb]
  		\begin{widepage}
  		\setlength{\figurewidth}{0.3\textwidth}
@@ -3997,7 +3997,7 @@
  		\label{rat:fig:findformula}
  		\end{widepage}
  	\end{figure}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -4034,7 +4034,7 @@
  		\end{shortsolution}
  	\end{subproblem}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -4099,7 +4099,7 @@
  		\end{subproblem}
  	\end{multicols}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2012
@@ -4181,7 +4181,7 @@
  		\end{subproblem}
  	\end{multicols}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -4212,7 +4212,7 @@
  		\end{shortsolution}
  	\end{subproblem}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   Feb 2011
@@ -4265,8 +4265,8 @@
  		\end{shortsolution}
  	\end{subproblem}
  	\end{problem}
-
-
+ 	 	 	
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -4309,7 +4309,7 @@
  		Sketch a graph of $r$.
  		\begin{shortsolution}
  			A graph of $r$ is shown below.
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -4329,7 +4329,7 @@
  		\end{shortsolution}
  	\end{subproblem}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   July 2012
@@ -4367,8 +4367,8 @@
  		\end{subproblem}
  	\end{multicols}
  	\end{problem}
-
-
+ 	 	 	
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   July 2012
@@ -4419,8 +4419,8 @@
  		\end{subproblem}
  	\end{multicols}
  	\end{problem}
-
-
+ 	 	 	
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -4428,7 +4428,7 @@
  	\begin{problem}[Find a formula from a table]\label{rat:prob:findformula}
  	\Crefrange{rat:tab:findformular}{rat:tab:findformulau} show values of rational functions $r$, $q$, $s$,
  	and $t$. Assume that any values marked with an X are undefined.
-
+ 	 	 	
  	\begin{table}[!htb]
  		\begin{widepage}
  		\centering
@@ -4525,7 +4525,7 @@
  				r(-4) & = \frac{-4-3}{-4+2} \\
  				      & = \frac{7}{2}       \\
  			\end{aligned}$
-
+ 			 			 			
  			$r(-3)=\ldots$ etc
  		\end{shortsolution}
  	\end{subproblem}
@@ -4541,9 +4541,9 @@
  		\begin{shortsolution}
  			$\begin{aligned}[t]
  				s(-4) & =\frac{-4+2}{(-4-3)(-4+1)} \\
- 				      & =-\frac{2}{21}
+ 				      & =-\frac{2}{21}             
  			\end{aligned}$
-
+ 			 			 			
  			$s(-3)=\ldots$ etc
  		\end{shortsolution}
  	\end{subproblem}
@@ -4563,13 +4563,13 @@
  	\end{subproblem}
  	\end{problem}
  	\end{exercises}
-
+ 	 	 	
 \section{Graphing rational functions (horizontal asymptotes)}
  \reformatstepslist{R} % the steps list should be R1, R2, \ldots
  We studied rational functions in the previous section, but were
  not asked to graph them; in this section we will demonstrate the
  steps to be followed in order to sketch graphs of the functions.
-
+   
  Remember from \vref{rat:def:function} that rational functions have
  the form
  \[
@@ -4583,7 +4583,7 @@
  in this section \emph{will have a horizontal asymptote} (see \vref{rat:def:longrun}).
  The cases in which the degree of $p$ is greater than the degree of $q$
  is covered in the next section.
-
+   
  Before we begin, it is important to remember the following:
  \begin{itemize}
  	\item Our sketches will give a good representation of the overall
@@ -4612,10 +4612,10 @@
  	find the exact coordinates of local minimums, local maximums, and points
  	of inflection.
  \end{pccspecialcomment}
-
+   
  The examples that follow show how \crefrange{rat:step:first}{rat:step:last} can be
  applied to a variety of different rational functions.
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   May 2012
@@ -4641,7 +4641,7 @@
  		\end{steps}
  	\end{pccsolution}
  \end{pccexample}
-
+   
  \begin{figure}[!htbp]
  	\begin{subfigure}{.45\textwidth}
  		\begin{tikzpicture}
@@ -4678,7 +4678,7 @@
  	\end{subfigure}%
  	\caption{$y=\dfrac{1}{x-2}$}
  \end{figure}
-
+   
  The function $r$ in \cref{rat:ex:1overxminus2p2} has a horizontal asymptote which has equation $y=0$.
  This asymptote lies on the horizontal axis, and you might (understandably) find it hard
  to distinguish between the two lines (\cref{rat:fig:1overxminus2p2}). When faced
@@ -4685,7 +4685,7 @@
  with such a situation, it is perfectly acceptable to draw the horizontal axis
  as a dashed line| just make sure to label it correctly. We will demonstrate this
  in the next example.
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   May 2012
@@ -4711,12 +4711,12 @@
  			is, because we know what the overall shape will be. Let's compute $v(2)$
  			\begin{align*}
  				v(2) & =\dfrac{10}{2} \\
- 				     & = 5
+ 				     & = 5            
  			\end{align*}
  			We therefore mark the point $(2,5)$ on \cref{rat:fig:1overxp2}, and then complete the sketch using
  			the details we found in the previous steps.
  		\end{steps}
-
+ 		 		 		
  		\begin{figure}[!htbp]
  			\begin{subfigure}{.45\textwidth}
  				\begin{tikzpicture}
@@ -4760,7 +4760,7 @@
  		\end{figure}
  	\end{pccsolution}
  \end{pccexample}
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   May 2012
@@ -4778,7 +4778,7 @@
  			\begin{align*}
  				u(x) & =\frac{-4(x^2-9)}{x^2-8x+15}     \\
  				     & =\frac{-4(x+3)(x-3)}{(x-5)(x-3)} \\
- 				     & =\frac{-4(x+3)}{x-5}
+ 				     & =\frac{-4(x+3)}{x-5}             
  			\end{align*}
  			provided that $x\ne 3$. Therefore $u$ has a vertical asymptote at $5$ and
  			a hole at $3$. The curve of $u$ has $2$ branches.
@@ -4788,7 +4788,7 @@
  			\item We put the details we have obtained so far on \cref{rat:fig:1overxminus2p1}. Notice
  			that there is only one way to complete the graph, which we have done in \cref{rat:fig:1overxminus2p2}.
  		\end{steps}
-
+ 		 		 		
  		\begin{figure}[!htbp]
  			\begin{subfigure}{.45\textwidth}
  				\begin{tikzpicture}
@@ -4833,12 +4833,12 @@
  		\end{figure}
  	\end{pccsolution}
  \end{pccexample}
-
+   
  \Cref{rat:ex:1overxminus2p2,rat:ex:1overxp1,rat:ex:asympandholep1} have focused on functions
  that only have one vertical asymptote; the remaining examples in this section
  concern functions that have more than one vertical asymptote. We will demonstrate
  that \crefrange{rat:step:first}{rat:step:last} still apply.
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   May 2012
@@ -4862,13 +4862,13 @@
  			of the numerator and denominator, we say that $w$ has a horizontal
  			asymptote with equation $y=\frac{2}{1}=2$.
  			\item We put the details we have obtained so far on \cref{rat:fig:sketchtwoasymptp1}.
-
+ 			 			 			
  			The function $w$ is a little more complicated than the functions that
  			we have considered in the previous examples because the curve has $3$
  			branches. When graphing such functions, it is generally a good idea to start with the branch
  			for which you have the most information| in this case, that is the \emph{middle} branch
  			on the interval $(-5,4)$.
-
+ 			 			 			
  			Once we have drawn the middle branch, there is only one way to complete the graph
  			(because of our observations about the behavior of $w$ around its vertical asymptotes),
  			which we have done in \cref{rat:fig:sketchtwoasymptp2}.
@@ -4875,7 +4875,7 @@
  		\end{steps}
  	\end{pccsolution}
  \end{pccexample}
-
+   
  \begin{figure}[!htbp]
  	\begin{subfigure}{.45\textwidth}
  		\begin{tikzpicture}
@@ -4921,12 +4921,12 @@
  	\end{subfigure}%
  	\caption{$y=\dfrac{2(x+3)(x-5)}{(x+5)(x-4)}$}
  \end{figure}
-
+   
  The rational functions that we have considered so far have had simple
  factors in the denominator; each function has behaved like $\frac{1}{x}$
  around each of its vertical asymptotes. \Cref{rat:ex:2asympnozeros,rat:ex:2squaredasymp}
  consider functions that have a repeated factor in the denominator.
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   May 2012
@@ -4949,17 +4949,17 @@
  			denominator of $f$ is $2$. $f$ has a horizontal asymptote with
  			equation $y=0$.
  			\item We put the details we have obtained so far on \cref{rat:fig:2asympnozerosp1}.
-
+ 			 			 			
  			The function $f$ is similar to the function $w$ that we considered in \cref{rat:ex:sketchtwoasymp}|
  			it has two vertical asymptotes and $3$ branches, but in contrast to $w$ it does not have any zeros.
-
+ 			 			 			
  			We sketch $f$ in \cref{rat:fig:2asympnozerosp2}, using the middle branch as our guide
  			because we have the most information about the function on the interval $(-5,4)$.
-
+ 			 			 			
  			Once we have drawn the middle branch, there is only one way to complete the graph
  			because of our observations about the behavior of $f$ around its vertical asymptotes (it behaves like $\frac{1}{x}$),
  			which we have done in \cref{rat:fig:2asympnozerosp2}.
-
+ 			 			 			
  			Note that we are not yet able to find the local minimum of $f$ algebraically on the interval $(-5,4)$,
  			so we make a reasonable guess as to where it is| we can be confident that it is above the horizontal axis
  			since $f$ has no zeros. You may think that this is unsatisfactory, but once we have the tools of calculus, we will
@@ -4967,7 +4967,7 @@
  		\end{steps}
  	\end{pccsolution}
  \end{pccexample}
-
+   
  \begin{figure}[!htbp]
  	\begin{subfigure}{.45\textwidth}
  		\begin{tikzpicture}
@@ -5011,7 +5011,7 @@
  	\end{subfigure}%
  	\caption{$y=\dfrac{100}{(x+5)(x-4)^2}$}
  \end{figure}
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   May 2012
@@ -5037,19 +5037,19 @@
  			\cref{rat:fig:2squaredasymp1}. The function $g$ is similar to the functions
  			we considered in \cref{rat:ex:sketchtwoasymp,rat:ex:2asympnozeros} because
  			it has $2$ vertical asymptotes and $3$ branches.
-
+ 			 			 			
  			We sketch $g$ using the middle branch as our guide because we have the most information
  			about $g$ on the interval $(-3,5)$. Note that there is no other way to draw this branch
  			without introducing other zeros which $g$ does not have.
-
+ 			 			 			
  			Once we have drawn the middle branch, there is only one way to complete the graph
  			because of our observations about the behavior of $g$ around its vertical asymptotes| it
  			behaves like $\frac{1}{x^2}$.
-
+ 			 			 			
  		\end{steps}
  	\end{pccsolution}
  \end{pccexample}
-
+   
  \begin{figure}[!htbp]
  	\begin{subfigure}{.45\textwidth}
  		\begin{tikzpicture}
@@ -5093,7 +5093,7 @@
  	\end{subfigure}%
  	\caption{$y=\dfrac{50(2-x)}{(x+3)^2(x-5)^2}$}
  \end{figure}
-
+   
  Each of the rational functions that we have considered so far has had either
  a \emph{simple} zero, or no zeros at all. Remember from our work on polynomial
  functions, and particularly \vref{poly:def:multzero}, that a \emph{repeated} zero
@@ -5100,7 +5100,7 @@
  corresponds to the curve of the function behaving differently at the zero
  when compared to how the curve behaves at a simple zero. \Cref{rat:ex:doublezero} details a
  function that has a non-simple zero.
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   June 2012
@@ -5127,20 +5127,20 @@
  			\cref{rat:fig:doublezerop1}. The function $h$ is different
  			from the functions that we have considered in previous examples because
  			of the multiplicity of the zero at $3$.
-
+ 			 			 			
  			We sketch $h$ using the middle branch as our guide because we have the most information
  			about $h$ on the interval $(-4,6)$. Note that there is no other way to draw this branch
  			without introducing other zeros which $h$ does not have| also note how
  			the curve bounces off the horizontal axis at $3$.
-
+ 			 			 			
  			Once we have drawn the middle branch, there is only one way to complete the graph
  			because of our observations about the behavior of $h$ around its vertical asymptotes| it
  			behaves like $\frac{1}{x}$.
-
+ 			 			 			
  		\end{steps}
  	\end{pccsolution}
  \end{pccexample}
-
+   
  \begin{figure}[!htbp]
  	\begin{subfigure}{.45\textwidth}
  		\begin{tikzpicture}
@@ -5199,7 +5199,7 @@
  at $b$, and a vertical asymptote at $c$. Furthermore, these functions
  behave like $\frac{1}{x}$ around their vertical asymptote, and the
  curve of each function will have $2$ branches.
-
+   
  Katie has been working with $3$ functions that have the form given
  in \cref{rat:eq:deducecurve}, and has followed \crefrange{rat:step:first}{rat:step:penultimate};
  her results are shown in \cref{rat:fig:deducecurve}. There is just one
@@ -5207,7 +5207,7 @@
  Help Katie finish each graph by deducing the curve of each function.
  \begin{shortsolution}
  	\Vref{rat:fig:deducecurve1}
-
+ 	 	 	
  	\begin{tikzpicture}[/pgf/declare function={f=3*(x+4)/(x+5);}]
  		\begin{axis}[
  				xmin=-10,xmax=10,
@@ -5222,9 +5222,9 @@
  			\addplot[pccplot] expression[domain=-4.76923:10,samples=50]{f};
  		\end{axis}
  	\end{tikzpicture}
-
+ 	 	 	
  	\Vref{rat:fig:deducecurve2}
-
+ 	 	 	
  	\begin{tikzpicture}[/pgf/declare function={f=-3*(x-2)/(x-4);}]
  		\begin{axis}[
  				xmin=-10,xmax=10,
@@ -5239,9 +5239,9 @@
  			\addplot[pccplot] expression[domain=4.85714:10]{f};
  		\end{axis}
  	\end{tikzpicture}
-
+ 	 	 	
  	\Vref{rat:fig:deducecurve4}
-
+ 	 	 	
  	\begin{tikzpicture}[/pgf/declare function={f=2*(x-6)/(x-4);}]
  		\begin{axis}[
  				xmin=-10,xmax=10,
@@ -5258,7 +5258,7 @@
  	\end{tikzpicture}
  \end{shortsolution}
  \end{problem}
-
+   
  \begin{figure}[!htb]
  	\begin{widepage}
  	\setlength{\figurewidth}{0.3\textwidth}
@@ -5316,7 +5316,7 @@
  	\label{rat:fig:deducecurve}
  	\end{widepage}
  \end{figure}
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   June 2012
@@ -5331,13 +5331,13 @@
  at $b$ and $c$, and vertical asymptotes at $d$ and $e$. Furthermore,
  these functions behave like $\frac{1}{x}$ around both vertical asymptotes,
  and the curve of the function will have $3$ branches.
-
+   
  David has followed \crefrange{rat:step:first}{rat:step:penultimate} for
  $3$ separate functions, and drawn the results in \cref{rat:fig:deducehard}.
  Help David finish each graph by deducing the curve of each function.
  \begin{shortsolution}
  	\Vref{rat:fig:deducehard1}
-
+ 	 	 	
  	\begin{tikzpicture}[/pgf/declare function={f=(x-6)*(x+3)/( (x-4)*(x+1));}]
  		\begin{axis}[
  				xmin=-10,xmax=10,
@@ -5354,9 +5354,9 @@
  			\addplot[pccplot] expression[domain=4.24276:10]{f};
  		\end{axis}
  	\end{tikzpicture}
-
+ 	 	 	
  	\Vref{rat:fig:deducehard2}
-
+ 	 	 	
  	\begin{tikzpicture}[/pgf/declare function={f=3*(x-2)*(x+3)/( (x-6)*(x+5));}]
  		\begin{axis}[
  				xmin=-10,xmax=10,
@@ -5373,9 +5373,9 @@
  			\addplot[pccplot] expression[domain=7.34324:10]{f};
  		\end{axis}
  	\end{tikzpicture}
-
+ 	 	 	
  	\Vref{rat:fig:deducehard3}
-
+ 	 	 	
  	\begin{tikzpicture}[/pgf/declare function={f=2*(x-7)*(x+3)/( (x+6)*(x-5));}]
  		\begin{axis}[
  				xmin=-10,xmax=10,
@@ -5392,10 +5392,10 @@
  			\addplot[pccplot] expression[domain=5.25586:10]{f};
  		\end{axis}
  	\end{tikzpicture}
-
+ 	 	 	
  \end{shortsolution}
  \end{problem}
-
+   
  \begin{figure}[!htb]
  	\begin{widepage}
  	\setlength{\figurewidth}{0.3\textwidth}
@@ -5470,7 +5470,7 @@
  		$y=\dfrac{4}{x+2}$
  		\begin{shortsolution}
  			Vertical intercept: $(0,2)$; vertical asymptote: $x=-2$, horizontal asymptote: $y=0$.
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -5494,7 +5494,7 @@
  			Vertical intercept:$\left( 0,\frac{1}{9} \right)$;
  			horizontal intercept: $\left( \frac{1}{2},0 \right)$;
  			vertical asymptotes: $x=-3$, $x=3$, horizontal asymptote: $y=0$.
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -5519,7 +5519,7 @@
  		\begin{shortsolution}
  			Vertical intercept $\left( 0,-\frac{3}{5} \right)$; horizontal
  			intercept: $(-3,0)$; vertical asymptote: $x=5$; horizontal asymptote: $y=1$.
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -5544,7 +5544,7 @@
  		\begin{shortsolution}
  			Vertical intercept: $(0,-3)$; horizontal intercept: $\left( -\frac{3}{2},0 \right)$;
  			vertical asymptote: $x=\frac{1}{3}$, horizontal asymptote: $y=\frac{2}{3}$.
-
+ 			 			 			
  			\begin{tikzpicture}[/pgf/declare function={f=(2*x+3)/(3*x-1);}]
  				\begin{axis}[
  						framed,
@@ -5568,7 +5568,7 @@
  			Vertical intercept: $\left( 0,-\frac{4}{9} \right)$;
  			horizontal intercepts: $(2,0)$, $(-2,0)$;
  			vertical asymptotes: $x=-3$, $x=3$; horizontal asymptote: $y=-1$.
-
+ 			 			 			
  			\begin{tikzpicture}[/pgf/declare function={f=(4-x^2)/(x^2-9);}]
  				\begin{axis}[
  						framed,
@@ -5594,7 +5594,7 @@
  			Vertical intercept: $\left( 0,\frac{4}{5} \right)$;
  			horizontal intercepts: $\left( -\frac{5}{4},0 \right)$, $\left( \frac{4}{3},0 \right)$;
  			vertical asymptotes: $x=-\frac{5}{2}$, $x=5$; horizontal asymptote: $y=6$.
-
+ 			 			 			
  			\begin{tikzpicture}[/pgf/declare function={f=(4*x+5)*(3*x-4)/((2*x+5)*(x-5));}]
  				\begin{axis}[
  						framed,
@@ -5724,7 +5724,7 @@
  	R(x)=
  	\begin{dcases}
  		\frac{2}{x+3},    & x<-5     \\
- 		\frac{x-4}{x-10}, & x\geq -5
+ 		\frac{x-4}{x-10}, & x\geq -5 
  	\end{dcases}
  \]
  Evaluate each of the following.
@@ -5762,7 +5762,7 @@
  \end{subproblem}
  \end{problem}
  \end{exercises}
-
+   
 \section{Graphing rational functions (oblique asymptotes)}\label{rat:sec:oblique}
  \begin{subproblem}
  	$y=\dfrac{x^2+1}{x-4}$
@@ -5771,7 +5771,7 @@
  			\item $\left( 0,-\frac{1}{4} \right)$
  			\item Vertical asymptote: $x=4$.
  			\item A graph of the function is shown below
-
+ 			       			       			      
  			      \begin{tikzpicture}[/pgf/declare function={f=(x^2+1)/(x-4);}]
  			      	\begin{axis}[
  			      			framed,
@@ -5798,7 +5798,7 @@
  			\item $(0,0)$, $(-3,0)$
  			\item Vertical asymptote: $x=5$, horizontal asymptote: none.
  			\item A graph of the function is shown below
-
+ 			       			       			      
  			      \begin{tikzpicture}[/pgf/declare function={f=x^3*(x+3)/(x-5);}]
  			      	\begin{axis}[
  			      			framed,

Modified: trunk/Master/texmf-dist/doc/support/latexindent/success/sampleBEFORE.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/sampleBEFORE.tex	2016-10-27 01:16:43 UTC (rev 42365)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/sampleBEFORE.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -25,7 +25,7 @@
  a \emph{decreasing} function.  Similarly, if $a>0$ then $g$ is
  \emph{concave up} and if $a<0$ then $g$ is \emph{concave down}. Graphical
  representations of these statements are given in \cref{poly:fig:linquad}.
-
+   
  \begin{figure}[!htb]
  	\setlength{\figurewidth}{.2\textwidth}
  	\begin{subfigure}{\figurewidth}
@@ -94,7 +94,7 @@
  	\caption{Typical graphs of linear and quadratic functions.}
  	\label{poly:fig:linquad}
  \end{figure}
-
+   
  Let's look a little more closely at the formulas for $f$ and $g$ in
  \cref{poly:eq:linquad}. Note that the \emph{degree}
  of $f$ is $1$ since the highest power of $x$ that is present in the
@@ -101,11 +101,11 @@
  formula for $f(x)$ is $1$. Similarly, the degree of $g$ is $2$ since
  the highest power of $x$ that is present in the formula for $g(x)$
  is $2$.
-
+   
  In this section we will build upon our knowledge of these elementary
  functions. In particular, we will generalize the functions $f$ and $g$ to a function $p$ that has
  any degree that we wish.
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   March 2012
@@ -161,7 +161,7 @@
  	\end{subproblem}
  	\end{problem}
  \end{essentialskills}
-
+   
  \subsection*{Power functions with positive exponents}
  	The study of polynomials will rely upon a good knowledge
  	of power functions| you may reasonably ask, what is a power function?
@@ -171,17 +171,17 @@
  			f(x) = a_n x^n
  		\]
  		where $n$ can be any real number.
-
+ 		 		 		
  		Note that for this section we will only be concerned with the
  		case when $n$ is a positive integer.
  	\end{pccdefinition}
-
+ 	 	 	
  	You may find assurance in the fact that you are already very comfortable
  	with power functions that have $n=1$ (linear) and $n=2$ (quadratic). Let's
  	explore some power functions that you might not be so familiar with.
  	As you read \cref{poly:ex:oddpow,poly:ex:evenpow}, try and spot
  	as many patterns and similarities as you can.
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   March 2012
@@ -199,12 +199,12 @@
  			the long-run behavior of each of the functions is the same, and in particular
  			\begin{align*}
  				f(x)\rightarrow\infty                           & \text{ as } x\rightarrow\infty  \\
- 				\mathllap{\text{and }}   f(x)\rightarrow-\infty & \text{ as } x\rightarrow-\infty
+ 				\mathllap{\text{and }}   f(x)\rightarrow-\infty & \text{ as } x\rightarrow-\infty 
  			\end{align*}
  			The same results hold for $g$ and $h$.
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	\begin{figure}[!htb]
  		\begin{minipage}{.45\textwidth}
  			\begin{tikzpicture}
@@ -254,7 +254,7 @@
  			\label{poly:fig:evenpow}
  		\end{minipage}%
  	\end{figure}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   March 2012
@@ -271,12 +271,12 @@
  			of each of the functions is the same, and in particular
  			\begin{align*}
  				F(x)\rightarrow\infty                          & \text{ as } x\rightarrow\infty  \\
- 				\mathllap{\text{and }}   F(x)\rightarrow\infty & \text{ as } x\rightarrow-\infty
+ 				\mathllap{\text{and }}   F(x)\rightarrow\infty & \text{ as } x\rightarrow-\infty 
  			\end{align*}
  			The same result holds for $G$ and $H$.
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	\begin{doyouunderstand}
  		\begin{problem}
  		Repeat \cref{poly:ex:oddpow,poly:ex:evenpow} using (respectively)
@@ -285,7 +285,7 @@
  			\begin{shortsolution}
  				The functions $f$, $g$, and $h$ have domain $(-\infty,\infty)$ and
  				are graphed below.
-
+ 				 				 				
  				\begin{tikzpicture}
  					\begin{axis}[
  							framed,
@@ -303,11 +303,11 @@
  						\legend{$f$,$g$,$h$}
  					\end{axis}
  				\end{tikzpicture}
-
+ 				 				 				
  				Note that
  				\begin{align*}
  					f(x)\rightarrow-\infty                         & \text{ as } x\rightarrow\infty  \\
- 					\mathllap{\text{and }}   f(x)\rightarrow\infty & \text{ as } x\rightarrow-\infty
+ 					\mathllap{\text{and }}   f(x)\rightarrow\infty & \text{ as } x\rightarrow-\infty 
  				\end{align*}
  				The same is true for $g$ and $h$.
  			\end{shortsolution}
@@ -317,7 +317,7 @@
  			\begin{shortsolution}
  				The functions $F$, $G$, and $H$ have domain $(-\infty,\infty)$ and
  				are graphed below.
-
+ 				 				 				
  				\begin{tikzpicture}
  					\begin{axis}[
  							framed,
@@ -335,11 +335,11 @@
  						\legend{$F$,$G$,$H$}
  					\end{axis}
  				\end{tikzpicture}
-
+ 				 				 				
  				Note that
  				\begin{align*}
  					F(x)\rightarrow-\infty                          & \text{ as } x\rightarrow\infty  \\
- 					\mathllap{\text{and }}   F(x)\rightarrow-\infty & \text{ as } x\rightarrow-\infty
+ 					\mathllap{\text{and }}   F(x)\rightarrow-\infty & \text{ as } x\rightarrow-\infty 
  				\end{align*}
  				The same is true for $G$ and $H$.
  			\end{shortsolution}
@@ -346,7 +346,7 @@
  		\end{subproblem}
  		\end{problem}
  	\end{doyouunderstand}
-
+ 	 	 	
  \subsection*{Polynomial functions}
  	Now that we have a little more familiarity with power functions,
  	we can define polynomial functions. Provided that you were comfortable
@@ -357,7 +357,7 @@
  	and quadratic functions. Once you've studied the examples and problems
  	in this section, you'll hopefully agree that polynomial functions
  	are remarkably predictable.
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -376,11 +376,11 @@
  		\end{itemize}
  		In particular, we call $a_n$ the \emph{leading} coefficient, and $a_nx^n$ the
  		\emph{leading term}.
-
+ 		 		 		
  		Note that if a polynomial is given in factored form, then the degree can be found
  		by counting the number of linear factors.
  	\end{pccdefinition}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   March 2012
@@ -416,7 +416,7 @@
  			\end{enumerate}
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   March 2012
@@ -440,7 +440,7 @@
  			      shape and long-run behavior to the functions described in \cref{poly:ex:oddpow}.
  		\end{itemize}
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -536,7 +536,7 @@
  		\caption{Graphs to illustrate typical curves of polynomial functions.}
  		\label{poly:fig:typical}
  	\end{figure}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   March 2012
@@ -550,7 +550,7 @@
  		to guide you.
  		\begin{shortsolution}
  			$a_1<0$:
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -563,9 +563,9 @@
  					\addplot expression[domain=-10:8]{-(x+2)};
  				\end{axis}
  			\end{tikzpicture}
-
+ 			 			 			
  			$a_2<0$
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -578,9 +578,9 @@
  					\addplot expression[domain=-4:4]{-(x^2-6)};
  				\end{axis}
  			\end{tikzpicture}
-
+ 			 			 			
  			$a_3<0$
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -593,9 +593,9 @@
  					\addplot expression[domain=-7.5:7.5]{-0.05*(x+6)*x*(x-6)};
  				\end{axis}
  			\end{tikzpicture}
-
+ 			 			 			
  			$a_4<0$
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -608,9 +608,9 @@
  					\addplot expression[domain=-2.35:5.35,samples=100]{-0.2*(x-5)*x*(x-3)*(x+2)};
  				\end{axis}
  			\end{tikzpicture}
-
+ 			 			 			
  			$a_5<0$
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -626,11 +626,11 @@
  		\end{shortsolution}
  		\end{problem}
  	\end{doyouunderstand}
-
+ 	 	 	
  	\fixthis{poly: Need a more basic example here- it can have a similar
  		format to the multiple zeros example, but just keep it simple; it should
  	be halfway between the 2 examples surrounding it}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -642,7 +642,7 @@
  		\begin{align*}
  			p(x) & =(x-3)^2(x+4)^2       \\
  			q(x) & =x(x+2)^2(x-1)^2(x-3) \\
- 			r(x) & =x(x-3)^3(x+1)^2
+ 			r(x) & =x(x-3)^3(x+1)^2      
  		\end{align*}
  		Find the degree of $p$, $q$, and $r$, and decide if the functions bounce off or cut
  		through the horizontal axis at each of their zeros.
@@ -649,17 +649,17 @@
  		\begin{pccsolution}
  			The degree of $p$ is 4. Referring to \cref{poly:fig:bouncep},
  			the curve bounces off the horizontal axis at both zeros, $3$ and $4$.
-
+ 			 			 			
  			The degree of $q$ is 6. Referring to \cref{poly:fig:bounceq},
  			the curve bounces off the horizontal axis at $-2$ and $1$, and cuts
  			through the horizontal axis at $0$ and $3$.
-
+ 			 			 			
  			The degree of $r$ is 6. Referring to \cref{poly:fig:bouncer},
  			the curve bounces off the horizontal axis at $-1$, and cuts through
  			the horizontal axis at $0$ and at $3$, although is flattened immediately to the left and right of $3$.
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	\setlength{\figurewidth}{0.25\textwidth}
  	\begin{figure}[!htb]
  		\begin{subfigure}{\figurewidth}
@@ -712,7 +712,7 @@
  		\caption{}
  		\label{poly:fig:moremultiple}
  	\end{figure}
-
+ 	 	 	
  	\begin{pccdefinition}[Multiple zeros]\label{poly:def:multzero}
  		Let $p$ be a polynomial that has a repeated linear factor $(x-a)^n$. Then we say
  		that $p$ has a multiple zero at $a$ of multiplicity $n$ and
@@ -724,7 +724,7 @@
  		\end{itemize}
  		If $n=1$, then we say that $p$ has a \emph{simple} zero at $a$.
  	\end{pccdefinition}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -786,7 +786,7 @@
  				      Let's check if the formula we have written satisfies this requirement
  				      \begin{align*}
  				      	p(1) & = (1)(4)(2)(-1) \\
- 				      	     & = -8
+ 				      	     & = -8            
  				      \end{align*}
  				      which is clearly not correct| it is close though. We can correct this by
  				      multiplying $p$ by a constant $k$; so let's assume that
@@ -807,7 +807,7 @@
  				      evaluate $p(2)$
  				      \begin{align*}
  				      	p(2) & =k(4)^2(-1) \\
- 				      	     & =-16k
+ 				      	     & =-16k       
  				      \end{align*}
  				      We solve the equation $4=-8k$ and obtain $k=-\frac{1}{4}$ and conclude that the
  				      formula for $q(x)$ is
@@ -817,8 +817,8 @@
  			\end{enumerate}
  		\end{pccsolution}
  	\end{pccexample}
-
-
+ 	 	 	
+ 	 	 	
  	\fixthis{Chris: need sketching polynomial problems}
  	\begin{pccspecialcomment}[Steps to follow when sketching polynomial functions]
  		\begin{steps}
@@ -865,12 +865,12 @@
  				\item We draw the details we have obtained so far on \cref{poly:fig:simplecubicp1}. Given
  				that the curve of $p$ looks like the curve of $x^3$ in the long-run, we are able to complete a sketch of the
  				graph of $p$ in \cref{poly:fig:simplecubicp2}.
-
+ 				 				 				
  				Note that we can not find the coordinates of the local minimums, local maximums, and inflection
  				points| for the moment we make reasonable guesses as to where these points are (you'll find how
  				to do this in calculus).
  			\end{steps}
-
+ 			 			 			
  			\begin{figure}[!htbp]
  				\begin{subfigure}{.45\textwidth}
  					\begin{tikzpicture}
@@ -909,7 +909,7 @@
  			\end{figure}
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2012
@@ -934,7 +934,7 @@
  				\item We mark the details we have found so far on \cref{poly:fig:degree5p1}. Given that
  				the curve of $q$ looks like the curve of $-x^5$ in the long-run, we can complete \cref{poly:fig:degree5p2}.
  			\end{steps}
-
+ 			 			 			
  			\begin{figure}[!htbp]
  				\begin{subfigure}{.45\textwidth}
  					\begin{tikzpicture}
@@ -973,7 +973,7 @@
  			\end{figure}
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2012
@@ -1000,7 +1000,7 @@
  				the curve of $r$ looks like the curve of $x^6$ in the long-run, we complete the graph
  				of $r$ in \cref{poly:fig:degree6p2}.
  			\end{steps}
-
+ 			 			 			
  			\begin{figure}[!htbp]
  				\begin{subfigure}{.45\textwidth}
  					\begin{tikzpicture}
@@ -1038,7 +1038,7 @@
  			\end{figure}
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   March 2012
@@ -1058,7 +1058,7 @@
  			$x$ represents the length of a side, and $V(x)$ represents the volume
  			of the box, we necessarily require both values to be positive; we illustrate
  			the part of the curve that applies to this problem using a solid line.
-
+ 			 			 			
  			\begin{figure}[!htb]
  				\centering
  				\begin{tikzpicture}
@@ -1080,7 +1080,7 @@
  				\caption{$y=V(x)$}
  				\label{poly:fig:opentoppedbox}
  			\end{figure}
-
+ 			 			 			
  			According to \cref{poly:fig:opentoppedbox}, the maximum volume of such a box is
  			approximately $\unit[4000]{cm^2}$, and we achieve it using a base of length
  			approximately $\unit[20]{cm}$. Since the base is square and each sheet of cardboard
@@ -1087,7 +1087,7 @@
  			is $\unit[1200]{cm^2}$, we conclude that the dimensions of each box are $\unit[20]{cm}\times\unit[20]{cm}\times\unit[30]{cm}$.
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  \subsection*{Complex zeros}
  	There has been a pattern to all of the examples that we have seen so far|
  	the degree of the polynomial has dictated the number of \emph{real} zeros that the
@@ -1094,7 +1094,7 @@
  	polynomial has. For example, the function $p$ in \cref{poly:ex:simplecubic}
  	has degree $3$, and $p$ has $3$ real zeros; the function $q$ in \cref{poly:ex:degree5}
  	has degree $5$ and $q$ has $5$ real zeros.
-
+ 	 	 	
  	You may wonder if this result can be generalized| does every polynomial that
  	has degree $n$ have $n$ real zeros? Before we tackle the general result,
  	let's consider an example that may help motivate it.
@@ -1113,7 +1113,7 @@
  			x^2+1=0
  		\end{equation}
  		The solutions to \cref{poly:eq:complx} are $\pm i$.
-
+ 		 		 		
  		We conclude that $c$ has $3$ zeros: $0$ and $\pm i$; we note that \emph{not
  		all of them are real}.
  	\end{pccexample}
@@ -1143,7 +1143,7 @@
  			We begin by factoring $p$
  			\begin{align*}
  				p(x) & =x^4-2x^3+5x^2 \\
- 				     & =x^2(x^2-2x+5)
+ 				     & =x^2(x^2-2x+5) 
  			\end{align*}
  			We note that $0$ is a zero of $p$ with multiplicity $2$. The other zeros of $p$
  			can be found by solving the equation
@@ -1154,7 +1154,7 @@
  			\begin{align*}
  				x & =\frac{2\pm\sqrt{(-2)^2}-20}{2(1)} \\
  				  & =\frac{2\pm\sqrt{-16}}{2}          \\
- 				  & =1\pm 2i
+ 				  & =1\pm 2i                           
  			\end{align*}
  			We conclude that $p$ has $4$ zeros: $0$ (multiplicity $2$), and $1\pm 2i$ (simple).
  		\end{pccsolution}
@@ -1169,13 +1169,13 @@
  			We know that the zeros of a polynomial can be found by analyzing the linear
  			factors. We are given the zeros, and have to work backwards to find the
  			linear factors.
-
+ 			 			 			
  			We begin by assuming that $p$ has the form
  			\begin{align*}
  				p(x) & =(x-(2-i\sqrt{2}))(x-(2+i\sqrt{2}))                           \\
  				     & =x^2-x(2+i\sqrt{2})-x(2-i\sqrt{2})+(2-i\sqrt{2})(2+i\sqrt{2}) \\
  				     & =x^2-4x+(4-2i^2)                                              \\
- 				     & =x^2-4x+6
+ 				     & =x^2-4x+6                                                     
  			\end{align*}
  			We conclude that a possible formula for a polynomial function, $p$,
  			that has zeros at $2\pm i\sqrt{2}$ is
@@ -1235,8 +1235,8 @@
  		\end{enumerate}
  	\end{shortsolution}
  	\end{problem}
-
-
+ 	 	 	
+ 	 	 	
  	\begin{figure}[!htb]
  		\setlength{\figurewidth}{0.3\textwidth}
  		\begin{subfigure}{\figurewidth}
@@ -1287,10 +1287,10 @@
  		\caption{}
  		\label{poly:fig:findformula}
  	\end{figure}
-
-
-
-
+ 	 	 	
+ 	 	 	
+ 	 	 	
+ 	 	 	
  	\begin{exercises}
  	%===================================
  	%   Author: Hughes
@@ -1459,7 +1459,7 @@
  	\begin{align*}
  		p(x) & = (x-1)(x+2)(x-3)           \\
  		m(x) & = -(x-1)(x+2)(x-3)          \\
- 		n(x) & = (x-1)(x+2)(x-3)(x+1)(x+4)
+ 		n(x) & = (x-1)(x+2)(x-3)(x+1)(x+4) 
  	\end{align*}
  	Note that for our present purposes we are not concerned with the vertical scale of the graphs.
  	\begin{subproblem}
@@ -1466,7 +1466,7 @@
  		Identify both on the graph {\em and} algebraically, the zeros of each polynomial.
  		\begin{shortsolution}
  			$y=p(x)$ is shown below.
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						xmin=-5,xmax=5,
@@ -1477,9 +1477,9 @@
  					\addplot[soldot] coordinates{(-2,0)(1,0)(3,0)};
  				\end{axis}
  			\end{tikzpicture}
-
+ 			 			 			
  			$y=m(x)$ is shown below.
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						xmin=-5,xmax=5,
@@ -1490,9 +1490,9 @@
  					\addplot[soldot] coordinates{(-2,0)(1,0)(3,0)};
  				\end{axis}
  			\end{tikzpicture}
-
+ 			 			 			
  			$y=n(x)$ is shown below.
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						xmin=-5,xmax=5,
@@ -1503,7 +1503,7 @@
  					\addplot[soldot] coordinates{(-4,0)(-2,0)(-1,0)(1,0)(3,0)};
  				\end{axis}
  			\end{tikzpicture}
-
+ 			 			 			
  			The zeros of $p$ are $-2$, $1$, and $3$; the zeros of $m$ are $-2$, $1$, and $3$; the zeros of $n$ are
  			$-4$, $-2$, $-1$, and $3$.
  		\end{shortsolution}
@@ -1520,7 +1520,7 @@
  		\end{shortsolution}
  	\end{subproblem}
  	\end{problem}
-
+ 	 	 	
  	\begin{figure}[!htb]
  		\begin{widepage}
  		\setlength{\figurewidth}{0.3\textwidth}
@@ -1773,7 +1773,7 @@
  		\end{shortsolution}
  	\end{subproblem}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -1792,7 +1792,7 @@
  		$\dd\lim_{x\rightarrow\infty}s(x)=\infty$,
  	\end{shortsolution}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -1917,7 +1917,7 @@
  		is positive.
  		\begin{shortsolution}
  			Assuming that $a_3>0$:
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						xmin=-10,xmax=10,
@@ -1937,7 +1937,7 @@
  		is negative.
  		\begin{shortsolution}
  			Assuming that $a_3<0$:
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						xmin=-10,xmax=10,
@@ -1961,7 +1961,7 @@
  		coefficient of $q$ is positive. Hint: only one of the zeros is simple.
  		\begin{shortsolution}
  			Assuming that $a_4>0$ there are $2$ different options:
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						xmin=-10,xmax=10,
@@ -1982,7 +1982,7 @@
  		coefficient of $q$ is negative.
  		\begin{shortsolution}
  			Assuming that $a_4<0$ there are $2$ different options:
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						xmin=-10,xmax=10,
@@ -2194,7 +2194,7 @@
  		\end{subproblem}
  	\end{multicols}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   July 2012
@@ -2238,7 +2238,7 @@
  		\end{shortsolution}
  	\end{subproblem}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   July 2012
@@ -2290,7 +2290,7 @@
  		\end{subproblem}
  	\end{multicols}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -2298,7 +2298,7 @@
  	\begin{problem}[Find a formula from a table]\label{poly:prob:findformula}
  	\Crefrange{poly:tab:findformulap}{poly:tab:findformulas} show values of polynomial functions, $p$, $q$,
  	$r$, and $s$.
-
+ 	 	 	
  	\begin{table}[!htb]
  		\centering
  		\begin{widepage}
@@ -2382,7 +2382,7 @@
  		\end{subtable}
  		\end{widepage}
  	\end{table}
-
+ 	 	 	
  	\begin{subproblem}
  		Assuming that all of the zeros of $p$ are shown (in \cref{poly:tab:findformulap}), how many zeros does $p$ have?
  		\begin{shortsolution}
@@ -2433,7 +2433,7 @@
  	\end{subproblem}
  	\end{problem}
  	\end{exercises}
-
+ 	 	 	
 \section{Rational functions}
  \subsection*{Power functions with negative exponents}
  	The study of rational functions will rely upon a good knowledge
@@ -2455,21 +2455,21 @@
  			the long-run behavior of each of the functions is the same, and in particular
  			\begin{align*}
  				f(x)\rightarrow 0                         & \text{ as } x\rightarrow\infty  \\
- 				\mathllap{\text{and }}  f(x)\rightarrow 0 & \text{ as } x\rightarrow-\infty
+ 				\mathllap{\text{and }}  f(x)\rightarrow 0 & \text{ as } x\rightarrow-\infty 
  			\end{align*}
  			The same results hold for $g$ and $h$. Note also that each of the functions
  			has a \emph{vertical asymptote} at $0$. We see that
  			\begin{align*}
  				f(x)\rightarrow -\infty                         & \text{ as } x\rightarrow 0^- \\
- 				\mathllap{\text{and }}   f(x)\rightarrow \infty & \text{ as } x\rightarrow 0^+
+ 				\mathllap{\text{and }}   f(x)\rightarrow \infty & \text{ as } x\rightarrow 0^+ 
  			\end{align*}
  			The same results hold for $g$ and $h$.
-
+ 			 			 			
  			The curve of a function that has a vertical asymptote is necessarily separated
  			into \emph{branches}| each of the functions $f$, $g$, and $h$ have $2$ branches.
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	\begin{figure}[!htb]
  		\begin{minipage}{.45\textwidth}
  			\begin{tikzpicture}
@@ -2525,8 +2525,8 @@
  			\label{rat:fig:evenpow}
  		\end{minipage}%
  	\end{figure}
-
-
+ 	 	 	
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -2543,7 +2543,7 @@
  			the long-run behavior of each of the functions is the same, and in particular
  			\begin{align*}
  				F(x)\rightarrow 0                           & \text{ as } x\rightarrow\infty  \\
- 				\mathllap{\text{and }}    f(x)\rightarrow 0 & \text{ as } x\rightarrow-\infty
+ 				\mathllap{\text{and }}    f(x)\rightarrow 0 & \text{ as } x\rightarrow-\infty 
  			\end{align*}
  			As in \cref{rat:ex:oddpow}, $F$ has a horizontal asymptote  that
  			has equation $y=0$.
@@ -2551,7 +2551,7 @@
  			has a \emph{vertical asymptote} at $0$. We see that
  			\begin{align*}
  				F(x)\rightarrow \infty                          & \text{ as } x\rightarrow 0^- \\
- 				\mathllap{\text{and }}   F(x)\rightarrow \infty & \text{ as } x\rightarrow 0^+
+ 				\mathllap{\text{and }}   F(x)\rightarrow \infty & \text{ as } x\rightarrow 0^+ 
  			\end{align*}
  			The same results hold for $G$ and $H$. Each of the functions $F$, $G$, and $H$
  			have $2$ branches.
@@ -2569,7 +2569,7 @@
  			\begin{shortsolution}
  				The functions $k$, $m$, and $n$ have domain $(-\infty,0)\cup (0,\infty)$, and
  				are graphed below.
-
+ 				 				 				
  				\begin{tikzpicture}
  					\begin{axis}[
  							framed,
@@ -2590,7 +2590,7 @@
  						\legend{$k$,$m$,$n$}
  					\end{axis}
  				\end{tikzpicture}
-
+ 				 				 				
  				Note that
  				\begin{align*}
  					k(x)\rightarrow 0                                & \text{ as } x\rightarrow\infty  \\
@@ -2597,7 +2597,7 @@
  					\mathllap{\text{and }}    k(x)\rightarrow 0      & \text{ as } x\rightarrow-\infty \\
  					\intertext{and also}
  					k(x)\rightarrow \infty                           & \text{ as } x\rightarrow 0^-    \\
- 					\mathllap{\text{and }}   k(x)\rightarrow -\infty & \text{ as } x\rightarrow 0^+
+ 					\mathllap{\text{and }}   k(x)\rightarrow -\infty & \text{ as } x\rightarrow 0^+    
  				\end{align*}
  				The same are true for $m$ and $n$.
  			\end{shortsolution}
@@ -2607,7 +2607,7 @@
  			\begin{shortsolution}
  				The functions $K$, $M$, and $N$ have domain $(-\infty,0)\cup (0,\infty)$, and
  				are graphed below.
-
+ 				 				 				
  				\begin{tikzpicture}
  					\begin{axis}[
  							framed,
@@ -2628,7 +2628,7 @@
  						\legend{$K$,$M$,$N$}
  					\end{axis}
  				\end{tikzpicture}
-
+ 				 				 				
  				Note that
  				\begin{align*}
  					K(x)\rightarrow 0                                & \text{ as } x\rightarrow\infty  \\
@@ -2635,7 +2635,7 @@
  					\mathllap{\text{and }}    K(x)\rightarrow 0      & \text{ as } x\rightarrow-\infty \\
  					\intertext{and also}
  					K(x)\rightarrow -\infty                          & \text{ as } x\rightarrow 0^-    \\
- 					\mathllap{\text{and }}   K(x)\rightarrow -\infty & \text{ as } x\rightarrow 0^+
+ 					\mathllap{\text{and }}   K(x)\rightarrow -\infty & \text{ as } x\rightarrow 0^+    
  				\end{align*}
  				The same are true for $M$ and $N$.
  			\end{shortsolution}
@@ -2642,7 +2642,7 @@
  		\end{subproblem}
  		\end{problem}
  	\end{doyouunderstand}
-
+ 	 	 	
  \subsection*{Rational functions}
  	\begin{pccdefinition}[Rational functions]\label{rat:def:function}
  		Rational functions have the form
@@ -2650,7 +2650,7 @@
  			r(x) = \frac{p(x)}{q(x)}
  		\]
  		where both $p$ and $q$ are polynomials.
-
+ 		 		 		
  		Note that
  		\begin{itemize}
  			\item the domain or $r$ will be all real numbers, except those that
@@ -2658,13 +2658,13 @@
  			\item the zeros of $r$ are the zeros of $p$, i.e the real numbers
  			      that make the \emph{numerator}, $p(x)$, equal to $0$.
  		\end{itemize}
-
+ 		 		 		
  		\Cref{rat:ex:oddpow,rat:ex:evenpow} are particularly important because $r$
  		will behave like $\frac{1}{x}$, or $\frac{1}{x^2}$ around its vertical asymptotes,
  		depending on the power that the relevant term is raised to| we will demonstrate
  		this in what follows.
  	\end{pccdefinition}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -2699,7 +2699,7 @@
  			\end{enumerate}
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -2779,7 +2779,7 @@
  			\caption{}
  			\label{rat:fig:whichiswhich}
  		\end{figure}
-
+ 		 		 		
  		\begin{pccsolution}
  			Let's start with the function $r$. Note that domain of $r$ is $(-\infty,3)\cup(0,3)$, so
  			we search for a function that has a vertical asymptote at $3$. There
@@ -2787,18 +2787,18 @@
  			but note that the function in \cref{rat:fig:which3} also has a vertical asymptote at $-2$
  			which is not consistent with the formula for $r(x)$. Therefore, $y=r(x)$
  			is graphed in \cref{rat:fig:which2}.
-
+ 			 			 			
  			The function $q$ has domain $(-\infty,-5)\cup(-5,\infty)$, so we search
  			for a function that has a vertical asymptote at $-5$. The only candidate
  			is the curve shown in \cref{rat:fig:which1}; note that the curve also goes through $(2,0)$,
  			which is consistent with the formula for $q(x)$, since $q(2)=0$, i.e $q$
  			has a zero at $2$.
-
+ 			 			 			
  			The function $k$ has domain $(-\infty,-2)\cup(-2,3)\cup(3,\infty)$, and
  			has vertical asymptotes at $-2$ and $3$. This is consistent with
  			the graph in \cref{rat:fig:which3} (and is the only curve that
  			has $3$ branches).
-
+ 			 			 			
  			We note that each function behaves like $\frac{1}{x}$ around its vertical asymptotes,
  			because each linear factor in each denominator is raised to the power $1$; if (for example)
  			the definition of $r$ was instead
@@ -2809,7 +2809,7 @@
  			the graph of $r$ would be very different. We will deal with these cases in the examples that follow.
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -2827,7 +2827,7 @@
  		so we are not surprised to see that each curve has $3$ branches. We also note that
  		the numerator of each function is the same, which tells us that each function has
  		only $1$ zero at $2$.
-
+ 		 		 		
  		The functions $g$ and $h$ are different from those that we have considered previously,
  		because they have a repeated factor in the denominator. Notice in particular
  		the way that the functions behave around their asymptotes:
@@ -2910,7 +2910,7 @@
  		\caption{}
  		\label{rat:fig:repfactd}
  	\end{figure}
-
+ 	 	 	
  	\Cref{rat:def:function} says that the zeros of
  	the rational function $r$ that has formula $r(x)=\frac{p(x)}{q(x)}$ are
  	the zeros of $p$. Let's explore this a little more.
@@ -2929,9 +2929,9 @@
  				x+5=0
  			\]
  			The zero of $\alpha$ is $-5$.
-
+ 			 			 			
  			Similarly, we may solve $9-x=0$ to find the zero of $\beta$, which is clearly $9$.
-
+ 			 			 			
  			The zeros of $\gamma$ satisfy the equation
  			\[
  				17x^2-10=0
@@ -2943,7 +2943,7 @@
  			The zeros of $\gamma$ are $\pm\frac{10}{17}$.
  		\end{pccsolution}
  	\end{pccexample}
-
+ 	 	 	
  \subsection*{Long-run behavior}
  	Our focus so far has been on the behavior of rational functions around
  	their \emph{vertical} asymptotes. In fact, rational functions also
@@ -2966,7 +2966,7 @@
  	\end{pccdefinition}
  	We will concentrate on functions that have horizontal asymptotes until
  	we reach \cref{rat:sec:oblique}.
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2012
@@ -2979,7 +2979,7 @@
  		and obtained the curves shown in \cref{rat:fig:horizasymp}. Kebede decides
  		to test his knowledgeable friend \pccname{Oscar}, and asks him
  		to match the formulas to the graphs.
-
+ 		 		 		
  		\begin{figure}[!htb]
  			\setlength{\figurewidth}{0.3\textwidth}
  			\begin{subfigure}{\figurewidth}
@@ -3050,7 +3050,7 @@
  			\caption{Horizontal asymptotes}
  			\label{rat:fig:horizasymp}
  		\end{figure}
-
+ 		 		 		
  		Oscar notices that each function has a vertical asymptote at $3$ and a zero at $-1$.
  		The main thing that catches Oscar's eye is that each function has a different
  		coefficient in the numerator, and that each curve has a different horizontal asymptote.
@@ -3064,7 +3064,7 @@
  		that since the degree of the numerator and the degree of the denominator is the same
  		for each of the functions $r$, $s$, and $t$, the horizontal asymptote will be determined
  		by evaluating the ratio of their leading coefficients.
-
+ 		 		 		
  		Oscar therefore says that $r$ should have a horizontal asymptote $y=\frac{1}{1}=1$, $s$ should
  		have a horizontal asymptote $y=\frac{2}{1}=2$, and $t$ should have a horizontal asymptote
  		$y=\frac{3}{1}=3$. Kebede is able to finish the problem from here, and says that $r$ is
@@ -3071,7 +3071,7 @@
  		shown in \cref{rat:fig:horizasymp2}, $s$ is shown in \cref{rat:fig:horizasymp1}, and
  		$t$ is shown in \cref{rat:fig:horizasymp3}.
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2012
@@ -3080,7 +3080,7 @@
  		\pccname{Xiao} and \pccname{Dwayne} saw \cref{rat:ex:horizasymp} but are a little confused
  		about horizontal asymptotes. What does it mean to say that a function $r$ has a horizontal
  		asymptote?
-
+ 		 		 		
  		They decide to explore the concept by
  		constructing a table of values for the rational functions $R$ and  $S$ that have formulas
  		\[
@@ -3119,13 +3119,13 @@
  				\end{tabular}
  			\end{minipage}
  		\end{table}
-
+ 		 		 		
  		Xiao and Dwayne study \cref{rat:tab:plusinfty,rat:tab:minusinfty} and decide that
  		the functions $R$ and $S$ never actually touch their horizontal asymptotes, but they
  		do get infinitely close. They also feel as if they have a better understanding of
  		what it means to study the behavior of a function as $x\rightarrow\pm\infty$.
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -3142,7 +3142,7 @@
  		\]
  		We also notice that the numerators of each function are quite similar| indeed, each
  		function has a zero at $2$, but how does each function behave around their zero?
-
+ 		 		 		
  		Using \cref{rat:fig:repfactn} to guide us, we note that
  		\begin{itemize}
  			\item $f$ has a horizontal intercept $(2,0)$, but the curve of
@@ -3152,7 +3152,7 @@
  			\item $h$ has a horizontal intercept $(2,0)$, and the curve of $h$
  			      also cuts the axis, but appears flattened as it does so.
  		\end{itemize}
-
+ 		 		 		
  		We can further enrich our study by discussing the long-run behavior of each function.
  		Using the tools of \cref{rat:def:longrun}, we can deduce that
  		\begin{itemize}
@@ -3162,7 +3162,7 @@
  			      study this more in \cref{rat:sec:oblique}).
  		\end{itemize}
  	\end{pccexample}
-
+ 	 	 	
  	\begin{figure}[!htb]
  		\setlength{\figurewidth}{0.3\textwidth}
  		\begin{subfigure}{\figurewidth}
@@ -3235,7 +3235,7 @@
  		\caption{}
  		\label{rat:fig:repfactn}
  	\end{figure}
-
+ 	 	 	
  \subsection*{Holes}
  	Rational functions have a vertical asymptote at $a$ if the denominator is $0$ at $a$.
  	What happens if the numerator is $0$ at the same place? In this case, we say that the rational
@@ -3250,7 +3250,7 @@
  		$(a,r(a))$ on the curve $y=r(x)$ by
  		using a hollow circle, $\circ$.
  	\end{pccdefinition}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   March 2012
@@ -3262,12 +3262,12 @@
  		\]
  		in their calculators, and can not decide if the correct graph
  		is \cref{rat:fig:hole} or \cref{rat:fig:hole1}.
-
+ 		 		 		
  		Luckily for them, Oscar is nearby, and can help them settle the debate.
  		Oscar demonstrates that
  		\begin{align*}
  			r(x) & =\frac{(x+3)(x-2)}{(x-2)} \\
- 			     & = x+3
+ 			     & = x+3                     
  		\end{align*}
  		but only when $x\ne 2$, because the function is undefined at $2$. Oscar
  		says that this necessarily means that the domain or $r$ is
@@ -3275,7 +3275,7 @@
  			(-\infty,2)\cup(2,\infty)
  		\]
  		and that $r$ must have a hole at $2$.
-
+ 		 		 		
  		Mohammed and Sue are very grateful for the clarification, and conclude that
  		the graph of $r$ is shown in \cref{rat:fig:hole1}.
  		\begin{figure}[!htb]
@@ -3319,7 +3319,7 @@
  			\end{minipage}%
  		\end{figure}
  	\end{pccexample}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -3333,12 +3333,12 @@
  		make the denominator equal to $0$. Notice that
  		\begin{align*}
  			f(x) & = \frac{x(x+3)}{x(x-4)} \\
- 			     & = \frac{x+3}{x-4}
+ 			     & = \frac{x+3}{x-4}       
  		\end{align*}
  		provided that $x\ne 0$. Since $0$ makes the numerator
  		and the denominator 0 at the same time, we say that $f$ has a hole at $(0,-\nicefrac{3}{4})$.
  		Note that this necessarily means that $f$ does not have a vertical intercept.
-
+ 		 		 		
  		We also note $f$ has a vertical asymptote at $4$; the function is graphed in \cref{rat:fig:holeex}.
  		\begin{figure}[!htb]
  			\centering
@@ -3362,9 +3362,9 @@
  			\label{rat:fig:holeex}
  		\end{figure}
  	\end{pccexample}
-
-
-
+ 	 	 	
+ 	 	 	
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   March 2012
@@ -3374,7 +3374,7 @@
  		if a rational function has a vertical asymptote, then it can
  		not possibly have local minimums and maximums, nor can it have
  		global minimums and maximums.
-
+ 		 		 		
  		Trang says this statement is not always true. She plots the functions
  		$f$ and $g$ that have formulas
  		\[
@@ -3383,7 +3383,7 @@
  		in \cref{rat:fig:minmax1,rat:fig:minmax2} and shows them to Seamus. On seeing the graphs,
  		Seamus quickly corrects himself, and says  that $f$ has a local (and global)
  		maximum of $2$ at $0$, and that $g$ has a local (and global) minimum of $-2$ at $0$.
-
+ 		 		 		
  		\begin{figure}[!htb]
  			\begin{minipage}{.45\textwidth}
  				\begin{tikzpicture}[/pgf/declare function={f=-32*(x-1)*(x+1)/(( x-2)^2*(x+2)^2);}]
@@ -3427,19 +3427,19 @@
  				\label{rat:fig:minmax2}
  			\end{minipage}%
  		\end{figure}
-
+ 		 		 		
  		Seamus also notes that (in its domain) the function $f$ is always concave down, and
  		that (in its domain) the function $g$ is always concave up. Furthermore, Trang
  		observes that each function behaves like $\frac{1}{x^2}$ around each of its vertical
  		asymptotes, because each linear factor in the denominator is raised to the power $2$.
-
+ 		 		 		
  		\pccname{Oscar} stops by and reminds both students about the long-run behavior; according
  		to \cref{rat:def:longrun} since the degree of the denominator is greater than the
  		degree of the numerator (in both functions), each function has a horizontal asymptote
  		at $y=0$.
  	\end{pccexample}
-
-
+ 	 	 	
+ 	 	 	
  	\investigation*{}
  	%===================================
  	%   Author: Pettit/Hughes
@@ -3448,12 +3448,12 @@
  	\begin{problem}[The spaghetti incident]
  	The same Queen from \vref{exp:prob:queenschessboard} has recovered from
  	the rice experiments, and has called her loyal jester for another challenge.
-
+ 	 	 	
  	The jester has an $11-$inch piece of uncooked spaghetti that he puts on a table;
  	he uses a book to cover $\unit[1]{inch}$ of it so that
  	$\unit[10]{inches}$ hang over the edge. The jester then produces a box of $\unit{mg}$
  	weights that can be hung from the spaghetti.
-
+ 	 	 	
  	The jester says it will take $\unit[y]{mg}$ to break the spaghetti when hung
  	$\unit[x]{inches}$ from the edge, according to the rule $y=\frac{100}{x}$.
  	\begin{margintable}
@@ -3537,7 +3537,7 @@
  		note that this necessarily means that you will not be able to plot all of the points.
  		\begin{shortsolution}
  			The graph of $y=\frac{100}{x}$ is shown below.
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -3567,9 +3567,9 @@
  	\end{subproblem}
  	The Queen looks forward to more food-related investigations from her jester.
  	\end{problem}
-
-
-
+ 	 	 	
+ 	 	 	
+ 	 	 	
  	%===================================
  	%   Author: Adams (Hughes)
  	%   Date:   March 2012
@@ -3593,17 +3593,17 @@
  			Paying off the debt in $2$ years, we use
  			\begin{align*}
  				M & = \frac{2000\cdot 0.015}{1-(1+0.015)^{-24}} \\
- 				  & \approx 99.85
+ 				  & \approx 99.85                               
  			\end{align*}
  			The monthly payments are \$99.85.
-
+ 			 			 			
  			Paying off the debt in $1$ year, we use
  			\begin{align*}
  				M & = \frac{2000\cdot 0.015}{1-(1+0.015)^{-12}} \\
- 				  & \approx 183.36
+ 				  & \approx 183.36                              
  			\end{align*}
  			The monthly payments are \$183.36
-
+ 			 			 			
  			In the $2$-year model we would pay a total of $\$99.85\cdot 12=\$2396.40$. In the
  			$1$-year model we would pay a total of $\$183.36\cdot 12=\$2200.32$. We would therefore
  			save $\$196.08$ if we went with the $1$-year model instead of the $2$-year model.
@@ -3619,20 +3619,20 @@
  			For the $20$-year loan we use
  			\begin{align*}
  				M & = \frac{300000\cdot \frac{0.052}{12}}{1-\left( 1+\frac{0.052}{12} \right)^{-12\cdot 20}} \\
- 				  & \approx 2013.16
+ 				  & \approx 2013.16                                                                          
  			\end{align*}
  			The monthly payments are \$2013.16.
-
+ 			 			 			
  			For the $30$-year loan we use
  			\begin{align*}
  				M & = \frac{300000\cdot \frac{0.052}{12}}{1-\left( 1+\frac{0.052}{12} \right)^{-12\cdot 30}} \\
- 				  & \approx 1647.33
+ 				  & \approx 1647.33                                                                          
  			\end{align*}
  			The monthly payments are \$1647.33.
-
+ 			 			 			
  			The total amount paid during the $20$-year loan is $\$2013.16\cdot 12\cdot 20=\$483,158.40$.
  			The total amount paid during the $30$-year loan is $\$1647.33\cdot 12\cdot 30=\$593,038.80$.
-
+ 			 			 			
  			Recommendation: if you can afford the payments, choose the $20$-year loan.
  		\end{shortsolution}
  	\end{subproblem}
@@ -3662,7 +3662,7 @@
  				This means that the monthly payments will be calculated using
  				\begin{align*}
  					M & = \frac{14000\cdot \frac{0.04}{12}}{1-\left( 1+\frac{0.04}{12} \right)^{-12\cdot 5}} \\
- 					  & \approx 257.83
+ 					  & \approx 257.83                                                                       
  				\end{align*}
  				The monthly payments will be $\$257.83$. The total amount paid will be
  				$\$257.83\cdot 5\cdot 12=\$15,469.80$, of which $\$1469.80$ is interest.
@@ -3670,7 +3670,7 @@
  				This means that the monthly payments will be calculated using
  				\begin{align*}
  					M & = \frac{12000\cdot \frac{0.08}{12}}{1-\left( 1+\frac{0.08}{12} \right)^{-12\cdot 5}} \\
- 					  & \approx 243.32
+ 					  & \approx 243.32                                                                       
  				\end{align*}
  				The monthly payments will be $\$243.32$. The total amount paid
  				will be $\$243.32\cdot 5\cdot 12 =\$14,599.20$, of which $\$2599.2$ is
@@ -3681,7 +3681,7 @@
  		\end{shortsolution}
  	\end{subproblem}
  	\end{problem}
-
+ 	 	 	
  	\begin{exercises}
  	%===================================
  	%   Author: Hughes
@@ -3783,7 +3783,7 @@
  				$\begin{aligned}[t]
  					r(0) & =\frac{(0-2)(0+3)}{(0+5)(0-7)} \\
  					     & =\frac{-6}{-35}                \\
- 					     & =\frac{6}{35}
+ 					     & =\frac{6}{35}                  
  				\end{aligned}$
  			\end{shortsolution}
  		\end{subproblem}
@@ -3793,7 +3793,7 @@
  				$\begin{aligned}[t]
  					r(1) & =\frac{(1-2)(1+3)}{(1+5)(1-7)} \\
  					     & =\frac{-4}{-36}                \\
- 					     & =\frac{1}{9}
+ 					     & =\frac{1}{9}                   
  				\end{aligned}$
  			\end{shortsolution}
  		\end{subproblem}
@@ -3803,7 +3803,7 @@
  				$\begin{aligned}[t]
  					r(2) & =\frac{(2-2)(2+3)}{(2+5)(2-7)} \\
  					     & = \frac{0}{-50}                \\
- 					     & =0
+ 					     & =0                             
  				\end{aligned}$
  			\end{shortsolution}
  		\end{subproblem}
@@ -3813,7 +3813,7 @@
  				$\begin{aligned}[t]
  					r(4) & =\frac{(4-2)(4+3)}{(4+5)(4-7)} \\
  					     & =\frac{14}{-27}                \\
- 					     & =-\frac{14}{27}
+ 					     & =-\frac{14}{27}                
  				\end{aligned}$
  			\end{shortsolution}
  		\end{subproblem}
@@ -3822,9 +3822,9 @@
  			\begin{shortsolution}
  				$\begin{aligned}[t]
  					r(7) & =\frac{(7-2)(7+3)}{(7+5)(7-7)} \\
- 					     & =\frac{50}{0}
+ 					     & =\frac{50}{0}                  
  				\end{aligned}$
-
+ 				 				 				
  				$r(7)$ is undefined.
  			\end{shortsolution}
  		\end{subproblem}
@@ -3834,7 +3834,7 @@
  				$\begin{aligned}[t]
  					r(-3) & =\frac{(-3-2)(-3+3)}{(-3+5)(-3-7)} \\
  					      & =\frac{0}{-20}                     \\
- 					      & =0
+ 					      & =0                                 
  				\end{aligned}$
  			\end{shortsolution}
  		\end{subproblem}
@@ -3843,9 +3843,9 @@
  			\begin{shortsolution}
  				$\begin{aligned}[t]
  					r(-5) & =\frac{(-5-2)(-5+3)}{(-5+5)(-5-7)} \\
- 					      & =\frac{14}{0}
+ 					      & =\frac{14}{0}                      
  				\end{aligned}$
-
+ 				 				 				
  				$r(-5)$ is undefined.
  			\end{shortsolution}
  		\end{subproblem}
@@ -3856,7 +3856,7 @@
  					r\left( \frac{1}{2} \right) & = \frac{\left( \frac{1}{2}-2 \right)\left( \frac{1}{2}+3 \right)}{\left( \frac{1}{2}+5 \right)\left( \frac{1}{2}-7 \right)} \\
  					                            & =\frac{-\frac{3}{2}\cdot\frac{7}{2}}{\frac{11}{2}\left( -\frac{13}{2} \right)}                                              \\
  					                            & =\frac{-\frac{21}{4}}{-\frac{143}{4}}                                                                                       \\
- 					                            & =\frac{37}{143}
+ 					                            & =\frac{37}{143}                                                                                                             
  				\end{aligned}$
  			\end{shortsolution}
  		\end{subproblem}
@@ -3908,7 +3908,7 @@
  		\end{subproblem}
  	\end{multicols}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -3925,7 +3925,7 @@
  		\end{itemize}
  	\end{shortsolution}
  	\end{problem}
-
+ 	 	 	
  	\begin{figure}[!htb]
  		\begin{widepage}
  		\setlength{\figurewidth}{0.3\textwidth}
@@ -3997,7 +3997,7 @@
  		\label{rat:fig:findformula}
  		\end{widepage}
  	\end{figure}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -4034,7 +4034,7 @@
  		\end{shortsolution}
  	\end{subproblem}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -4099,7 +4099,7 @@
  		\end{subproblem}
  	\end{multicols}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2012
@@ -4181,7 +4181,7 @@
  		\end{subproblem}
  	\end{multicols}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -4212,7 +4212,7 @@
  		\end{shortsolution}
  	\end{subproblem}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   Feb 2011
@@ -4265,8 +4265,8 @@
  		\end{shortsolution}
  	\end{subproblem}
  	\end{problem}
-
-
+ 	 	 	
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -4309,7 +4309,7 @@
  		Sketch a graph of $r$.
  		\begin{shortsolution}
  			A graph of $r$ is shown below.
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -4329,7 +4329,7 @@
  		\end{shortsolution}
  	\end{subproblem}
  	\end{problem}
-
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   July 2012
@@ -4367,8 +4367,8 @@
  		\end{subproblem}
  	\end{multicols}
  	\end{problem}
-
-
+ 	 	 	
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   July 2012
@@ -4419,8 +4419,8 @@
  		\end{subproblem}
  	\end{multicols}
  	\end{problem}
-
-
+ 	 	 	
+ 	 	 	
  	%===================================
  	%   Author: Hughes
  	%   Date:   May 2011
@@ -4428,7 +4428,7 @@
  	\begin{problem}[Find a formula from a table]\label{rat:prob:findformula}
  	\Crefrange{rat:tab:findformular}{rat:tab:findformulau} show values of rational functions $r$, $q$, $s$,
  	and $t$. Assume that any values marked with an X are undefined.
-
+ 	 	 	
  	\begin{table}[!htb]
  		\begin{widepage}
  		\centering
@@ -4525,7 +4525,7 @@
  				r(-4) & = \frac{-4-3}{-4+2} \\
  				      & = \frac{7}{2}       \\
  			\end{aligned}$
-
+ 			 			 			
  			$r(-3)=\ldots$ etc
  		\end{shortsolution}
  	\end{subproblem}
@@ -4541,9 +4541,9 @@
  		\begin{shortsolution}
  			$\begin{aligned}[t]
  				s(-4) & =\frac{-4+2}{(-4-3)(-4+1)} \\
- 				      & =-\frac{2}{21}
+ 				      & =-\frac{2}{21}             
  			\end{aligned}$
-
+ 			 			 			
  			$s(-3)=\ldots$ etc
  		\end{shortsolution}
  	\end{subproblem}
@@ -4563,13 +4563,13 @@
  	\end{subproblem}
  	\end{problem}
  	\end{exercises}
-
+ 	 	 	
 \section{Graphing rational functions (horizontal asymptotes)}
  \reformatstepslist{R} % the steps list should be R1, R2, \ldots
  We studied rational functions in the previous section, but were
  not asked to graph them; in this section we will demonstrate the
  steps to be followed in order to sketch graphs of the functions.
-
+   
  Remember from \vref{rat:def:function} that rational functions have
  the form
  \[
@@ -4583,7 +4583,7 @@
  in this section \emph{will have a horizontal asymptote} (see \vref{rat:def:longrun}).
  The cases in which the degree of $p$ is greater than the degree of $q$
  is covered in the next section.
-
+   
  Before we begin, it is important to remember the following:
  \begin{itemize}
  	\item Our sketches will give a good representation of the overall
@@ -4612,10 +4612,10 @@
  	find the exact coordinates of local minimums, local maximums, and points
  	of inflection.
  \end{pccspecialcomment}
-
+   
  The examples that follow show how \crefrange{rat:step:first}{rat:step:last} can be
  applied to a variety of different rational functions.
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   May 2012
@@ -4641,7 +4641,7 @@
  		\end{steps}
  	\end{pccsolution}
  \end{pccexample}
-
+   
  \begin{figure}[!htbp]
  	\begin{subfigure}{.45\textwidth}
  		\begin{tikzpicture}
@@ -4678,7 +4678,7 @@
  	\end{subfigure}%
  	\caption{$y=\dfrac{1}{x-2}$}
  \end{figure}
-
+   
  The function $r$ in \cref{rat:ex:1overxminus2p2} has a horizontal asymptote which has equation $y=0$.
  This asymptote lies on the horizontal axis, and you might (understandably) find it hard
  to distinguish between the two lines (\cref{rat:fig:1overxminus2p2}). When faced
@@ -4685,7 +4685,7 @@
  with such a situation, it is perfectly acceptable to draw the horizontal axis
  as a dashed line| just make sure to label it correctly. We will demonstrate this
  in the next example.
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   May 2012
@@ -4711,12 +4711,12 @@
  			is, because we know what the overall shape will be. Let's compute $v(2)$
  			\begin{align*}
  				v(2) & =\dfrac{10}{2} \\
- 				     & = 5
+ 				     & = 5            
  			\end{align*}
  			We therefore mark the point $(2,5)$ on \cref{rat:fig:1overxp2}, and then complete the sketch using
  			the details we found in the previous steps.
  		\end{steps}
-
+ 		 		 		
  		\begin{figure}[!htbp]
  			\begin{subfigure}{.45\textwidth}
  				\begin{tikzpicture}
@@ -4760,7 +4760,7 @@
  		\end{figure}
  	\end{pccsolution}
  \end{pccexample}
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   May 2012
@@ -4778,7 +4778,7 @@
  			\begin{align*}
  				u(x) & =\frac{-4(x^2-9)}{x^2-8x+15}     \\
  				     & =\frac{-4(x+3)(x-3)}{(x-5)(x-3)} \\
- 				     & =\frac{-4(x+3)}{x-5}
+ 				     & =\frac{-4(x+3)}{x-5}             
  			\end{align*}
  			provided that $x\ne 3$. Therefore $u$ has a vertical asymptote at $5$ and
  			a hole at $3$. The curve of $u$ has $2$ branches.
@@ -4788,7 +4788,7 @@
  			\item We put the details we have obtained so far on \cref{rat:fig:1overxminus2p1}. Notice
  			that there is only one way to complete the graph, which we have done in \cref{rat:fig:1overxminus2p2}.
  		\end{steps}
-
+ 		 		 		
  		\begin{figure}[!htbp]
  			\begin{subfigure}{.45\textwidth}
  				\begin{tikzpicture}
@@ -4833,12 +4833,12 @@
  		\end{figure}
  	\end{pccsolution}
  \end{pccexample}
-
+   
  \Cref{rat:ex:1overxminus2p2,rat:ex:1overxp1,rat:ex:asympandholep1} have focused on functions
  that only have one vertical asymptote; the remaining examples in this section
  concern functions that have more than one vertical asymptote. We will demonstrate
  that \crefrange{rat:step:first}{rat:step:last} still apply.
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   May 2012
@@ -4862,13 +4862,13 @@
  			of the numerator and denominator, we say that $w$ has a horizontal
  			asymptote with equation $y=\frac{2}{1}=2$.
  			\item We put the details we have obtained so far on \cref{rat:fig:sketchtwoasymptp1}.
-
+ 			 			 			
  			The function $w$ is a little more complicated than the functions that
  			we have considered in the previous examples because the curve has $3$
  			branches. When graphing such functions, it is generally a good idea to start with the branch
  			for which you have the most information| in this case, that is the \emph{middle} branch
  			on the interval $(-5,4)$.
-
+ 			 			 			
  			Once we have drawn the middle branch, there is only one way to complete the graph
  			(because of our observations about the behavior of $w$ around its vertical asymptotes),
  			which we have done in \cref{rat:fig:sketchtwoasymptp2}.
@@ -4875,7 +4875,7 @@
  		\end{steps}
  	\end{pccsolution}
  \end{pccexample}
-
+   
  \begin{figure}[!htbp]
  	\begin{subfigure}{.45\textwidth}
  		\begin{tikzpicture}
@@ -4921,12 +4921,12 @@
  	\end{subfigure}%
  	\caption{$y=\dfrac{2(x+3)(x-5)}{(x+5)(x-4)}$}
  \end{figure}
-
+   
  The rational functions that we have considered so far have had simple
  factors in the denominator; each function has behaved like $\frac{1}{x}$
  around each of its vertical asymptotes. \Cref{rat:ex:2asympnozeros,rat:ex:2squaredasymp}
  consider functions that have a repeated factor in the denominator.
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   May 2012
@@ -4949,17 +4949,17 @@
  			denominator of $f$ is $2$. $f$ has a horizontal asymptote with
  			equation $y=0$.
  			\item We put the details we have obtained so far on \cref{rat:fig:2asympnozerosp1}.
-
+ 			 			 			
  			The function $f$ is similar to the function $w$ that we considered in \cref{rat:ex:sketchtwoasymp}|
  			it has two vertical asymptotes and $3$ branches, but in contrast to $w$ it does not have any zeros.
-
+ 			 			 			
  			We sketch $f$ in \cref{rat:fig:2asympnozerosp2}, using the middle branch as our guide
  			because we have the most information about the function on the interval $(-5,4)$.
-
+ 			 			 			
  			Once we have drawn the middle branch, there is only one way to complete the graph
  			because of our observations about the behavior of $f$ around its vertical asymptotes (it behaves like $\frac{1}{x}$),
  			which we have done in \cref{rat:fig:2asympnozerosp2}.
-
+ 			 			 			
  			Note that we are not yet able to find the local minimum of $f$ algebraically on the interval $(-5,4)$,
  			so we make a reasonable guess as to where it is| we can be confident that it is above the horizontal axis
  			since $f$ has no zeros. You may think that this is unsatisfactory, but once we have the tools of calculus, we will
@@ -4967,7 +4967,7 @@
  		\end{steps}
  	\end{pccsolution}
  \end{pccexample}
-
+   
  \begin{figure}[!htbp]
  	\begin{subfigure}{.45\textwidth}
  		\begin{tikzpicture}
@@ -5011,7 +5011,7 @@
  	\end{subfigure}%
  	\caption{$y=\dfrac{100}{(x+5)(x-4)^2}$}
  \end{figure}
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   May 2012
@@ -5037,19 +5037,19 @@
  			\cref{rat:fig:2squaredasymp1}. The function $g$ is similar to the functions
  			we considered in \cref{rat:ex:sketchtwoasymp,rat:ex:2asympnozeros} because
  			it has $2$ vertical asymptotes and $3$ branches.
-
+ 			 			 			
  			We sketch $g$ using the middle branch as our guide because we have the most information
  			about $g$ on the interval $(-3,5)$. Note that there is no other way to draw this branch
  			without introducing other zeros which $g$ does not have.
-
+ 			 			 			
  			Once we have drawn the middle branch, there is only one way to complete the graph
  			because of our observations about the behavior of $g$ around its vertical asymptotes| it
  			behaves like $\frac{1}{x^2}$.
-
+ 			 			 			
  		\end{steps}
  	\end{pccsolution}
  \end{pccexample}
-
+   
  \begin{figure}[!htbp]
  	\begin{subfigure}{.45\textwidth}
  		\begin{tikzpicture}
@@ -5093,7 +5093,7 @@
  	\end{subfigure}%
  	\caption{$y=\dfrac{50(2-x)}{(x+3)^2(x-5)^2}$}
  \end{figure}
-
+   
  Each of the rational functions that we have considered so far has had either
  a \emph{simple} zero, or no zeros at all. Remember from our work on polynomial
  functions, and particularly \vref{poly:def:multzero}, that a \emph{repeated} zero
@@ -5100,7 +5100,7 @@
  corresponds to the curve of the function behaving differently at the zero
  when compared to how the curve behaves at a simple zero. \Cref{rat:ex:doublezero} details a
  function that has a non-simple zero.
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   June 2012
@@ -5127,20 +5127,20 @@
  			\cref{rat:fig:doublezerop1}. The function $h$ is different
  			from the functions that we have considered in previous examples because
  			of the multiplicity of the zero at $3$.
-
+ 			 			 			
  			We sketch $h$ using the middle branch as our guide because we have the most information
  			about $h$ on the interval $(-4,6)$. Note that there is no other way to draw this branch
  			without introducing other zeros which $h$ does not have| also note how
  			the curve bounces off the horizontal axis at $3$.
-
+ 			 			 			
  			Once we have drawn the middle branch, there is only one way to complete the graph
  			because of our observations about the behavior of $h$ around its vertical asymptotes| it
  			behaves like $\frac{1}{x}$.
-
+ 			 			 			
  		\end{steps}
  	\end{pccsolution}
  \end{pccexample}
-
+   
  \begin{figure}[!htbp]
  	\begin{subfigure}{.45\textwidth}
  		\begin{tikzpicture}
@@ -5199,7 +5199,7 @@
  at $b$, and a vertical asymptote at $c$. Furthermore, these functions
  behave like $\frac{1}{x}$ around their vertical asymptote, and the
  curve of each function will have $2$ branches.
-
+   
  Katie has been working with $3$ functions that have the form given
  in \cref{rat:eq:deducecurve}, and has followed \crefrange{rat:step:first}{rat:step:penultimate};
  her results are shown in \cref{rat:fig:deducecurve}. There is just one
@@ -5207,7 +5207,7 @@
  Help Katie finish each graph by deducing the curve of each function.
  \begin{shortsolution}
  	\Vref{rat:fig:deducecurve1}
-
+ 	 	 	
  	\begin{tikzpicture}[/pgf/declare function={f=3*(x+4)/(x+5);}]
  		\begin{axis}[
  				xmin=-10,xmax=10,
@@ -5222,9 +5222,9 @@
  			\addplot[pccplot] expression[domain=-4.76923:10,samples=50]{f};
  		\end{axis}
  	\end{tikzpicture}
-
+ 	 	 	
  	\Vref{rat:fig:deducecurve2}
-
+ 	 	 	
  	\begin{tikzpicture}[/pgf/declare function={f=-3*(x-2)/(x-4);}]
  		\begin{axis}[
  				xmin=-10,xmax=10,
@@ -5239,9 +5239,9 @@
  			\addplot[pccplot] expression[domain=4.85714:10]{f};
  		\end{axis}
  	\end{tikzpicture}
-
+ 	 	 	
  	\Vref{rat:fig:deducecurve4}
-
+ 	 	 	
  	\begin{tikzpicture}[/pgf/declare function={f=2*(x-6)/(x-4);}]
  		\begin{axis}[
  				xmin=-10,xmax=10,
@@ -5258,7 +5258,7 @@
  	\end{tikzpicture}
  \end{shortsolution}
  \end{problem}
-
+   
  \begin{figure}[!htb]
  	\begin{widepage}
  	\setlength{\figurewidth}{0.3\textwidth}
@@ -5316,7 +5316,7 @@
  	\label{rat:fig:deducecurve}
  	\end{widepage}
  \end{figure}
-
+   
  %===================================
  %   Author: Hughes
  %   Date:   June 2012
@@ -5331,13 +5331,13 @@
  at $b$ and $c$, and vertical asymptotes at $d$ and $e$. Furthermore,
  these functions behave like $\frac{1}{x}$ around both vertical asymptotes,
  and the curve of the function will have $3$ branches.
-
+   
  David has followed \crefrange{rat:step:first}{rat:step:penultimate} for
  $3$ separate functions, and drawn the results in \cref{rat:fig:deducehard}.
  Help David finish each graph by deducing the curve of each function.
  \begin{shortsolution}
  	\Vref{rat:fig:deducehard1}
-
+ 	 	 	
  	\begin{tikzpicture}[/pgf/declare function={f=(x-6)*(x+3)/( (x-4)*(x+1));}]
  		\begin{axis}[
  				xmin=-10,xmax=10,
@@ -5354,9 +5354,9 @@
  			\addplot[pccplot] expression[domain=4.24276:10]{f};
  		\end{axis}
  	\end{tikzpicture}
-
+ 	 	 	
  	\Vref{rat:fig:deducehard2}
-
+ 	 	 	
  	\begin{tikzpicture}[/pgf/declare function={f=3*(x-2)*(x+3)/( (x-6)*(x+5));}]
  		\begin{axis}[
  				xmin=-10,xmax=10,
@@ -5373,9 +5373,9 @@
  			\addplot[pccplot] expression[domain=7.34324:10]{f};
  		\end{axis}
  	\end{tikzpicture}
-
+ 	 	 	
  	\Vref{rat:fig:deducehard3}
-
+ 	 	 	
  	\begin{tikzpicture}[/pgf/declare function={f=2*(x-7)*(x+3)/( (x+6)*(x-5));}]
  		\begin{axis}[
  				xmin=-10,xmax=10,
@@ -5392,10 +5392,10 @@
  			\addplot[pccplot] expression[domain=5.25586:10]{f};
  		\end{axis}
  	\end{tikzpicture}
-
+ 	 	 	
  \end{shortsolution}
  \end{problem}
-
+   
  \begin{figure}[!htb]
  	\begin{widepage}
  	\setlength{\figurewidth}{0.3\textwidth}
@@ -5470,7 +5470,7 @@
  		$y=\dfrac{4}{x+2}$
  		\begin{shortsolution}
  			Vertical intercept: $(0,2)$; vertical asymptote: $x=-2$, horizontal asymptote: $y=0$.
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -5494,7 +5494,7 @@
  			Vertical intercept:$\left( 0,\frac{1}{9} \right)$;
  			horizontal intercept: $\left( \frac{1}{2},0 \right)$;
  			vertical asymptotes: $x=-3$, $x=3$, horizontal asymptote: $y=0$.
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -5519,7 +5519,7 @@
  		\begin{shortsolution}
  			Vertical intercept $\left( 0,-\frac{3}{5} \right)$; horizontal
  			intercept: $(-3,0)$; vertical asymptote: $x=5$; horizontal asymptote: $y=1$.
-
+ 			 			 			
  			\begin{tikzpicture}
  				\begin{axis}[
  						framed,
@@ -5544,7 +5544,7 @@
  		\begin{shortsolution}
  			Vertical intercept: $(0,-3)$; horizontal intercept: $\left( -\frac{3}{2},0 \right)$;
  			vertical asymptote: $x=\frac{1}{3}$, horizontal asymptote: $y=\frac{2}{3}$.
-
+ 			 			 			
  			\begin{tikzpicture}[/pgf/declare function={f=(2*x+3)/(3*x-1);}]
  				\begin{axis}[
  						framed,
@@ -5568,7 +5568,7 @@
  			Vertical intercept: $\left( 0,-\frac{4}{9} \right)$;
  			horizontal intercepts: $(2,0)$, $(-2,0)$;
  			vertical asymptotes: $x=-3$, $x=3$; horizontal asymptote: $y=-1$.
-
+ 			 			 			
  			\begin{tikzpicture}[/pgf/declare function={f=(4-x^2)/(x^2-9);}]
  				\begin{axis}[
  						framed,
@@ -5594,7 +5594,7 @@
  			Vertical intercept: $\left( 0,\frac{4}{5} \right)$;
  			horizontal intercepts: $\left( -\frac{5}{4},0 \right)$, $\left( \frac{4}{3},0 \right)$;
  			vertical asymptotes: $x=-\frac{5}{2}$, $x=5$; horizontal asymptote: $y=6$.
-
+ 			 			 			
  			\begin{tikzpicture}[/pgf/declare function={f=(4*x+5)*(3*x-4)/((2*x+5)*(x-5));}]
  				\begin{axis}[
  						framed,
@@ -5724,7 +5724,7 @@
  	R(x)=
  	\begin{dcases}
  		\frac{2}{x+3},    & x<-5     \\
- 		\frac{x-4}{x-10}, & x\geq -5
+ 		\frac{x-4}{x-10}, & x\geq -5 
  	\end{dcases}
  \]
  Evaluate each of the following.
@@ -5762,7 +5762,7 @@
  \end{subproblem}
  \end{problem}
  \end{exercises}
-
+   
 \section{Graphing rational functions (oblique asymptotes)}\label{rat:sec:oblique}
  \begin{subproblem}
  	$y=\dfrac{x^2+1}{x-4}$
@@ -5771,7 +5771,7 @@
  			\item $\left( 0,-\frac{1}{4} \right)$
  			\item Vertical asymptote: $x=4$.
  			\item A graph of the function is shown below
-
+ 			       			       			      
  			      \begin{tikzpicture}[/pgf/declare function={f=(x^2+1)/(x-4);}]
  			      	\begin{axis}[
  			      			framed,
@@ -5798,7 +5798,7 @@
  			\item $(0,0)$, $(-3,0)$
  			\item Vertical asymptote: $x=5$, horizontal asymptote: none.
  			\item A graph of the function is shown below
-
+ 			       			       			      
  			      \begin{tikzpicture}[/pgf/declare function={f=x^3*(x+3)/(x-5);}]
  			      	\begin{axis}[
  			      			framed,

Modified: trunk/Master/texmf-dist/doc/support/latexindent/success/stylefile.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/stylefile.tex	2016-10-27 01:16:43 UTC (rev 42365)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/stylefile.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -45,89 +45,91 @@
 						\advance\CurrentLineWidth -2em
 						\advance\CurrentLineWidth -\displayindent
 						\advance\CurrentLineWidth -\leftskip
-					\fi\fi
-					\ifdim\CurrentLineWidth<\z@ \CurrentLineWidth\z@\fi
-						% Enshrine the tab-to position; #1 might reference \CurrentLineWidth
-						\@tempdimb=#1\relax
-						\message{*** Tab to \the\@tempdimb, previous width is \the\CurrentLineWidth. ***}%
-						% Save width for possible return use
-						\xdef\TabPrevPos{\the\CurrentLineWidth}%
-						% Build the action to perform
-						\protected at xdef\TTo at action{%
-							\vrule\@width\z@\@depth\the\prevdepth
-							\ifdim\CurrentLineWidth>\@tempdimb
-								\ifTTo at overlap\else
-								\protect\newline \protect\null
-							\fi\fi
-							\protect\nobreak
-							\protect\hskip\the\@tempdimb\relax
-						}%
-						%\message{\string\TTo at action: \meaning \TTo at action. }%
-						% get back to the baseline, regardless of its depth.
-						\vskip-\prevdepth
-						\prevdepth-99\p@
-						\vskip\prevdepth
-					}}%
-					$$
-					% Don't count the display as lines in the paragraph
-					\count@\prevgraf \advance\count at -4 \prevgraf\count@
-					\TTo at action
-					%%   \penalty\@m % to allow a penalized line break
+					\fi
 				\fi
-				\endgroup
-				\TTo at overlapfalse
-				\ignorespaces
-				\fi
-			}
+				\ifdim\CurrentLineWidth<\z@ \CurrentLineWidth\z@\fi
+				% Enshrine the tab-to position; #1 might reference \CurrentLineWidth
+				\@tempdimb=#1\relax
+				\message{*** Tab to \the\@tempdimb, previous width is \the\CurrentLineWidth. ***}%
+				% Save width for possible return use
+				\xdef\TabPrevPos{\the\CurrentLineWidth}%
+				% Build the action to perform
+				\protected at xdef\TTo at action{%
+					\vrule\@width\z@\@depth\the\prevdepth
+					\ifdim\CurrentLineWidth>\@tempdimb
+						\ifTTo at overlap\else
+						\protect\newline \protect\null
+					\fi
+					\fi
+					\protect\nobreak
+					\protect\hskip\the\@tempdimb\relax
+				}%
+				%\message{\string\TTo at action: \meaning \TTo at action. }%
+				% get back to the baseline, regardless of its depth.
+				\vskip-\prevdepth
+				\prevdepth-99\p@
+				\vskip\prevdepth
+			}}%
+			$$
+			% Don't count the display as lines in the paragraph
+			\count@\prevgraf \advance\count at -4 \prevgraf\count@
+			\TTo at action
+			%%   \penalty\@m % to allow a penalized line break
+		\fi
+		\endgroup
+		\TTo at overlapfalse
+		\ignorespaces
+	\fi
+}
 
-			% \tab -- to the next position
-			% \hskip so \tab\tab moves two positions
-			% Allow a (penalized but flexible) line-break right after the tab.
-			%
-			\newcommand\tab{\leavevmode\hskip2sp\tabto{\NextTabStop}%
-				\nobreak\hskip\z@\@plus 30\p@\penalty4000\hskip\z@\@plus-30\p@\relax}
+% \tab -- to the next position
+% \hskip so \tab\tab moves two positions
+% Allow a (penalized but flexible) line-break right after the tab.
+%
+\newcommand\tab{\leavevmode\hskip2sp\tabto{\NextTabStop}%
+	\nobreak\hskip\z@\@plus 30\p@\penalty4000\hskip\z@\@plus-30\p@\relax}
 
 
-			% Expandable macro to select the next tab position from the list
+% Expandable macro to select the next tab position from the list
 
-			\newcommand\NextTabStop{%
-				\expandafter \TTo at nexttabstop \TabStopList,\maxdimen,>%
-			}
+\newcommand\NextTabStop{%
+	\expandafter \TTo at nexttabstop \TabStopList,\maxdimen,>%
+}
 
-			\def\TTo at nexttabstop #1,{%
-				\ifdim#1<\CurrentLineWidth
-					\expandafter\TTo at nexttabstop
-				\else
-					\ifdim#1<0.9999\linewidth#1\else\z@\fi
-						\expandafter\strip at prefix
-					\fi
-				}
-				\def\TTo at foundtabstop#1>{}
+\def\TTo at nexttabstop #1,{%
+	\ifdim#1<\CurrentLineWidth
+		\expandafter\TTo at nexttabstop
+	\else
+		\ifdim#1<0.9999\linewidth#1\else\z@\fi
+		\expandafter\strip at prefix
+	\fi
+}
+\def\TTo at foundtabstop#1>{}
 
-				\newcommand\TabPositions[1]{\def\TabStopList{\z@,#1}}
+\newcommand\TabPositions[1]{\def\TabStopList{\z@,#1}}
 
-				\newcommand\NumTabs[1]{%
-					\def\TabStopList{}%
-					\@tempdimb\linewidth
-					\divide\@tempdimb by#1\relax
-					\advance\@tempdimb 1sp % counteract rounding-down by \divide
-					\CurrentLineWidth\z@
-					\@whiledim\CurrentLineWidth<\linewidth\do {%
-						\edef\TabStopList{\TabStopList\the\CurrentLineWidth,}%
-						\advance\CurrentLineWidth\@tempdimb
-					}%
-					\edef\TabStopList{\TabStopList\linewidth}%
-				}
+\newcommand\NumTabs[1]{%
+	\def\TabStopList{}%
+	\@tempdimb\linewidth
+	\divide\@tempdimb by#1\relax
+	\advance\@tempdimb 1sp % counteract rounding-down by \divide
+	\CurrentLineWidth\z@
+	\@whiledim\CurrentLineWidth<\linewidth\do {%
+		\edef\TabStopList{\TabStopList\the\CurrentLineWidth,}%
+		\advance\CurrentLineWidth\@tempdimb
+	}%
+	\edef\TabStopList{\TabStopList\linewidth}%
+}
 
-				% default setting of tab positions:
-				\TabPositions{\parindent,.5\linewidth}
+% default setting of tab positions:
+\TabPositions{\parindent,.5\linewidth}
 
-				\newif\ifTTo at overlap \TTo at overlapfalse
+\newif\ifTTo at overlap \TTo at overlapfalse
 
-				\@ifundefined{predisplaydirection}{
-					\let\TTo at Direction\predisplaysize
-					\let\predisplaydirection\@undefined
-				}
-				{
-					\let\TTo at Direction\predisplaydirection
-				}
+\@ifundefined{predisplaydirection}{
+	\let\TTo at Direction\predisplaysize
+	\let\predisplaydirection\@undefined
+}
+{
+	\let\TTo at Direction\predisplaydirection
+}

Added: trunk/Master/texmf-dist/doc/support/latexindent/success/table4.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/table4.tex	                        (rev 0)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/table4.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -0,0 +1,22 @@
+% arara: indent: {overwrite: true, silent: on, localSettings: on}
+\documentclass{article}
+\usepackage{siunitx}
+
+\begin{document}
+\begin{tabular}{%
+	l
+	S[table-format=3.0]
+	S[table-format=3.2]
+	S[table-format=2.2]
+	S[table-format=3.2]
+	S[table-format=-2.2]
+	S[table-format=3.2]
+	}
+	Latex              & 360 & 101.77 & 10.71 & 101.86 & 64.60  & 127.20 \\
+	Manufacturing      & 360 & -7.33  & 12.59 & -7.24  & -49.00 & 22.00  \\
+	Cons               & 360 & -17.19 & 23.4  & -17.22 & -79.00 & 43.00  \\
+	Apple and Orange   & 360 & 3.38   & 13.84 & 3.60   & -47.00 & 29.00  \\
+	Services and Harry & 104 & -4.96  & 20.8  & -4.81  & -57.00 & 30.00  \\
+	Manchester         & 360 & -9.29  & 8.64  & -9.26  & -35.00 & 8.00   \\
+\end{tabular}
+\end{document}


Property changes on: trunk/Master/texmf-dist/doc/support/latexindent/success/table4.tex
___________________________________________________________________
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Added: trunk/Master/texmf-dist/doc/support/latexindent/success/table5.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/table5.tex	                        (rev 0)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/table5.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -0,0 +1,35 @@
+\documentclass{article}
+
+\begin{document}
+
+\begin{tabular}{M|MMMMMMMMM}
+	    & A_1 & A_2 & A_3 & A_4 & A_5 & A_6 & A_7 & A_8 & A_9  \\\hline
+	A_1 & 0   &     &     &     &     &     &     &     &  \\
+	A_2 &     & 0   &     &     &     &     &     &     &  \\
+	A_3 &     &     & 0   &     &     &     &     &     &  \\
+	A_4 &     &     &     & 0   &     &     &     &     &  \\
+	A_5 &     &     &     &     & 0   &     &     &     &  \\
+	A_6 &     &     &     &     &     & 0   &     &     &  \\
+	A_7 &     &     &     &     &     &     & 0   &     &  \\
+	A_8 &     &     &     &     &     &     &     & 0   &  \\
+	A_9 &     &     &     &     &     &     &     &     & 0  \\
+\end{tabular}
+\begin{tabularx}{M|MMMMMMMMM}
+	    & A_1 & A_2 & A_3 & A_4 & A_5 & A_6 & A_7 & A_8 & A_9 \\\hline
+	A_1 & 0   &     &     &     &     &     &     &     &     \\
+	A_2 &     & 0   &     &     &     &     &     &     &     \\
+	A_3 &     &     & 0   &     &     &     &     &     &     \\
+	A_4 &     &     &     & 0   &     &     &     &     &     \\
+	A_5 &     &     &     &     & 0   &     &     &     &     \\
+	A_6 &     &     &     &     &     & 0   &     &     &     \\
+	A_7 &     &     &     &     &     &     & 0   &     &     \\
+	A_8 &     &     &     &     &     &     &     & 0   &     \\
+	A_9 &     &     &     &     &     &     &     &     & 0   \\
+\end{tabularx}
+\begin{align*}
+	CCI_n          & = \frac{p_n-SMA(p_n)}{0.015 \cdot \sigma(p_n)}\\
+	\textrm{wobei} & n = \textrm{Perioden, i.\,d.\,R. 20};\p_n = \textrm{Typischer Preis/Kurs};\ SMA(p_n) = \textrm{SMA der typischen Preise};\\
+	               & \sigma(p_n) = \textrm{Standardabweichung}\\
+\end{align*}
+\end{document}
+


Property changes on: trunk/Master/texmf-dist/doc/support/latexindent/success/table5.tex
___________________________________________________________________
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Added: trunk/Master/texmf-dist/doc/support/latexindent/success/testHeadings-simple.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/testHeadings-simple.tex	                        (rev 0)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/testHeadings-simple.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -0,0 +1,56 @@
+% arara: indent: {onlyDefault: no, overwrite: true, trace: on, silent: yes, localSettings: true}
+\part{part}
+         part text
+         part text
+         \chapter{chapter long title}
+          chapter text
+          chapter text
+          \section[for the toc]{section}
+           section text
+           section text
+          \section[for the toc]{section}
+           section text
+           section text
+          \subsection[for the toc]{subsection}
+          	subsection text
+          	subsection text
+          \subsection[for the toc]{subsection}
+          	subsection text
+          	subsection text
+          \section[for the toc]{section}
+           section text
+           section text
+         \chapter{chapter}
+          chapter text
+          chapter text
+\part{part}
+         part text
+         part text
+         \chapter[toc]{chapter title}
+          chapter text
+          chapter text
+          \section[for the toc]{section}
+           section text
+           section text
+           \subsubsection[for the toc]{subsubsection}
+           	subsubsection text
+           	subsubsection text
+           	\paragraph{paragraph}
+           		paragraph text
+           		paragraph text
+           		\subparagraph{subparagraph}
+           			subparagraph text
+           			subparagraph text
+          \section[for the toc]{section}
+           section text
+           section text
+           \subsubsection[for the toc]{subsubsection}
+           	subsubsection text
+           	subsubsection text
+           	\paragraph{paragraph}
+           		paragraph text
+           		paragraph text
+           		\subparagraph{subparagraph}
+           			subparagraph text
+           			subparagraph text
+         \chapter[somethingelse]{goes here}


Property changes on: trunk/Master/texmf-dist/doc/support/latexindent/success/testHeadings-simple.tex
___________________________________________________________________
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Modified: trunk/Master/texmf-dist/doc/support/latexindent/success/testItems.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/testItems.tex	2016-10-27 01:16:43 UTC (rev 42365)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/testItems.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -70,7 +70,7 @@
 	      	      	      some other stuff
 	      	      	      % here's a comment
 	      	      \end{list}
-
+	      	      	      	      	      	      
 	      	\item some text some text
 	      	      some text some text
 	      	      some text some text

Modified: trunk/Master/texmf-dist/doc/support/latexindent/success/testcls.cls
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/testcls.cls	2016-10-27 01:16:43 UTC (rev 42365)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/testcls.cls	2016-10-27 21:22:59 UTC (rev 42366)
@@ -187,12 +187,14 @@
 % - Page break after
 % - TODO: couldn't get pdfbookmark to point to this page instead of the
 %   first page so it was removed.
+%\begin{noindent}
 \xpretocmd{\tableofcontents}{%
 	\begin{singlespace}}{}{}
-	\xapptocmd{\tableofcontents}{%
-	\end{singlespace}%
-	\pagestyle{plain}%
-	\clearpage}{}{}
+\xapptocmd{\tableofcontents}{%
+\end{singlespace}%
+\pagestyle{plain}%
+\clearpage}{}{}
+%\end{noindent}
 
 % - Add dot leader for chapter levels
 \renewcommand\cftchapdotsep{\cftdotsep}
@@ -201,23 +203,23 @@
 % - Adjust indentation of levels
 % - Capitalize title entries, if requested
 \if at isu@capstoc
-\renewcommand\cftchappresnum{\MakeUppercase{\chaptertitlename} }
-\cftsetindents{chapter}{0em}{8em}
-\cftsetindents{section}{2em}{0em}
-\cftsetindents{subsection}{3em}{0em}
-\renewcommand{\cftchapfont}{\MakeUppercase}
+	\renewcommand\cftchappresnum{\MakeUppercase{\chaptertitlename} }
+	\cftsetindents{chapter}{0em}{8em}
+	\cftsetindents{section}{2em}{0em}
+	\cftsetindents{subsection}{3em}{0em}
+	\renewcommand{\cftchapfont}{\MakeUppercase}
 \else
-\renewcommand\cftchappresnum{\chaptertitlename\ }
-\cftsetindents{chapter}{0em}{6em}
-\cftsetindents{section}{1em}{0em}
-\cftsetindents{subsection}{2em}{0em}
+	\renewcommand\cftchappresnum{\chaptertitlename\ }
+	\cftsetindents{chapter}{0em}{6em}
+	\cftsetindents{section}{1em}{0em}
+	\cftsetindents{subsection}{2em}{0em}
 \fi
 
 % - Remove section/subsection numbers from ToC by capturing
 %   see idea at  http://tex.stackexchange.com/questions/71123/remove-section-number-toc-entries-with-tocloft
 \if at isu@tocnumbersections@\else
-\renewcommand{\cftsecpresnum}{\begin{lrbox}{\@tempboxa}}
-\renewcommand{\cftsecaftersnum}{\end{lrbox}}
+	\renewcommand{\cftsecpresnum}{\begin{lrbox}{\@tempboxa}}
+	\renewcommand{\cftsecaftersnum}{\end{lrbox}}
 \fi
 
 \if at isu@tocnumbersubsections@\else
@@ -229,10 +231,12 @@
 % List of Figures:
 % - Single space
 % - Page break after
+%\begin{noindent}
 \xpretocmd{\listoffigures}{%
-	\begin{singlespace}}{}{}
-	\xapptocmd{\listoffigures}{%
-	\end{singlespace}\clearpage}{}{}
+\begin{singlespace}}{}{}
+\xapptocmd{\listoffigures}{%
+\end{singlespace}\clearpage}{}{}
+%\end{noindent}
 
 % - Prepend the word "Figure" to the number
 \renewcommand\cftfigpresnum{Figure }
@@ -242,10 +246,12 @@
 % List of Tables:
 % - Single space
 % - Page break after
+%\begin{noindent}
 \xpretocmd{\listoftables}{%
 	\begin{singlespace}}{}{}
-	\xapptocmd{\listoftables}{%
-	\end{singlespace}\clearpage}{}{}
+\xapptocmd{\listoftables}{%
+    \end{singlespace}\clearpage}{}{}
+%\end{noindent}
 
 % - Prepend the word "Table" to the number
 \renewcommand\cfttabpresnum{Table }
@@ -279,13 +285,13 @@
 % Verify that we actually got some main matter
 \AfterEndDocument{
 	\if at isu@errormissingmainmatter@
-	\ifdefined\@isu at gottitle
-	\ClassInfo{\@isu at classname}{Full dissertation mode}
-	\unless\ifdefined\@isu at gotmainmatter@
-	\ClassError{\@isu at classname}{Missing \protect\mainmatter\space before your first real chapter!}{Missing mainmatter}
-	%             \ClassError{\@isu at classname}{%
-	%                 \protect\mainmatter\space not called in your document expected before your first real chapter}{%
-	%                 You need to put \protect\mainmatter\space before your first real numbered chapter, typically your introduction.}
+		\ifdefined\@isu at gottitle
+		\ClassInfo{\@isu at classname}{Full dissertation mode}
+		\unless\ifdefined\@isu at gotmainmatter@
+		\ClassError{\@isu at classname}{Missing \protect\mainmatter\space before your first real chapter!}{Missing mainmatter}
+		%             \ClassError{\@isu at classname}{%
+		%                 \protect\mainmatter\space not called in your document expected before your first real chapter}{%
+		%                 You need to put \protect\mainmatter\space before your first real numbered chapter, typically your introduction.}
 	\fi
 	\fi
 	\fi
@@ -318,13 +324,13 @@
 \renewcommand{\maketitle}{
 	\newcommand{\@isu at gottitle}{} % Assume that \maketitle implies typesetting a full thesis, not just a chapter.
 	\ClassInfo{\@isu at classname}{Generating title page -- assuming we are typesetting a full dissertation.}
-
+			
 	\begin{titlepage}
 		\setlength{\parindent}{0pt} % Don't you dare try to indent!
 		\vbox to \textheight{ % Full-page box to contain everything and stretch everything.
 			\begin{center}                      % Center this whole page
 				\vspace*{12pt}                      % Designated blank line at the top of the page.
-
+												
 				\begin{singlespace}                 % Single-space this section, we manually add spacing.
 					\textbf{\@title}\\                  % Title in bold
 					\@isu at maketwoblanklines             % "two blank lines"
@@ -332,17 +338,17 @@
 					\@isu at maketwoblanklines             % "two blank lines"
 					\textbf{\@author}                   % Author in bold
 				\end{singlespace}
-
+												
 				\vfill{}                            % let LaTeX decide what "4-6 blank lines" should be.
-
+												
 				\begin{\isu at space}                  % Normal document spacing here.
 					A \isu at submissiontype\ submitted to the graduate faculty\\
 					in partial fulfillment of the requirements of the degree of\\
 					\MakeUppercase{\isu at degree}         % Doctor of Philosophy, etc. We enforce caps so they don't have to.
 				\end{\isu at space}
-
+												
 				\@isu at maketwoblanklines             % "two blank lines"
-
+												
 				\begin{singlespace}                 % Committee is single-spaced, looks like really long majors would be too.
 					\isu at majorline\\                    % "Major: MAJ (CONC)" or "Co-majors: MAJ; MAJ;
 					\medskip                            % Unspecified space here, looks like just "one blank line" on sample
@@ -349,10 +355,10 @@
 					Program of Study Committee:\\
 					\isu at committee                      % Committee, user-delimited with \\ and user-annoted with ", Major Professor" or "Co-major Professor"
 				\end{singlespace}
-
+												
 				\vfill{}                            % let LaTeX decide what "7-8 blank lines" should be.
 				\@isu at maketwoblanklines             % Suggest it's a little longer than the other vfill.
-
+												
 				\begin{\isu at space}                  % Normal document spacing here
 					Iowa State University\\
 					Ames, Iowa\\
@@ -359,7 +365,7 @@
 					\isu at gradyear                       % Newline after here, if needed, is in the copyright notice macro.
 					\isu at copyrightnotice                % Copyright line optional if copyright not formally filed.
 				\end{\isu at space}
-
+												
 			\end{center}
 		}
 	\end{titlepage}

Modified: trunk/Master/texmf-dist/doc/support/latexindent/success/theorem.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/theorem.tex	2016-10-27 01:16:43 UTC (rev 42365)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/theorem.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -32,7 +32,7 @@
 \begin{document}
 \section{Introduction}
  Lorem ipsum sed nulla id risus adipiscing vulputate.
-
+   
  \begin{example}
  	Um consumidor financiou a compra de um veículo pagando 48 parcelas de \$800,00 mensais e a taxa de juros cobrada pela concessionária foi de 1,2\% a.m.. Qual era o valor à vista do automóvel adquirido?
  	\newline
@@ -42,6 +42,6 @@
  	PV = 800 \times \left[ \dfrac{0,772820}{0,021274} \right] \newline
  	PV = \$29.061,79$
  \end{example}
-
+   
  Lorem ipsum sed nulla id risus adipiscing vulputate.
 \end{document}

Added: trunk/Master/texmf-dist/doc/support/latexindent/success/verbatim1.tex
===================================================================
--- trunk/Master/texmf-dist/doc/support/latexindent/success/verbatim1.tex	                        (rev 0)
+++ trunk/Master/texmf-dist/doc/support/latexindent/success/verbatim1.tex	2016-10-27 21:22:59 UTC (rev 42366)
@@ -0,0 +1,21 @@
+% arara: indent: {overwrite: true, silent: on}
+\documentclass{article}
+
+\begin{document}
+\begin{verbatim}{%
+		l
+		S[table-format=3.0]
+		S[table-format=3.2]
+		S[table-format=2.2]
+		S[table-format=3.2]
+		S[table-format=-2.2]
+		S[table-format=3.2]
+		}
+		Latex              & 360 & 101.77 & 10.71 & 101.86 & 64.60  & 127.20 \\
+Manufacturing      & 360 & -7.33  & 12.59 & -7.24  & -49.00 & 22.00  \\
+		Cons           & 360 & -17.19 & 23.4  & -17.22 & -79.00 & 43.00  \\
+		Apple and Orange  & 360 &       3.38   & 13.84 & 3.60   & -47.00 & 29.00  \\
+		Services and Harry & 104 & -4.96  & 20.8  & -4.81  & -57.00 & 30.00  \\
+		Manchester         & 360 & -9.29  & 8.64  & -9.26  & -35.00 & 8.00   \\
+\end{verbatim}
+\end{document}


Property changes on: trunk/Master/texmf-dist/doc/support/latexindent/success/verbatim1.tex
___________________________________________________________________
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Modified: trunk/Master/texmf-dist/scripts/latexindent/defaultSettings.yaml
===================================================================
--- trunk/Master/texmf-dist/scripts/latexindent/defaultSettings.yaml	2016-10-27 01:16:43 UTC (rev 42365)
+++ trunk/Master/texmf-dist/scripts/latexindent/defaultSettings.yaml	2016-10-27 21:22:59 UTC (rev 42366)
@@ -1,6 +1,10 @@
 # 
-# defaultSettings.yaml
+# defaultSettings.yaml for latexindent.pl,
+#                      a script that aims to
+#                      beautify .tex, .sty, .cls files
 #
+# (or latexindent.exe if you're on Windows)
+#
 # You're welcome to change anything you like in here, but 
 # it would probably be better to have your own user settings 
 # files somewhere else- remember that this file may be overwritten
@@ -63,13 +67,21 @@
 # environments that have tab delimiters, add more 
 # as needed
 lookForAlignDelims:
-   tabular: 1
-   tabularx: 1
+   tabular: 
+      delims: 1
+      alignDoubleBackSlash: 1
+      spacesBeforeDoubleBackSlash: 2
+   tabularx:
+      delims: 1
    longtable: 1
+   tabu: 1
    array: 1
    matrix: 1
    bmatrix: 1
+   Bmatrix: 1
    pmatrix: 1
+   vmatrix: 1
+   Vmatrix: 1
    align: 1
    align*: 1
    alignat: 1
@@ -202,6 +214,35 @@
     ifeof: 1
     iftrue: 1
     ifcase: 1
+
+# latexindent can be called without a file extension, 
+# e.g, simply
+#       latexindent myfile
+# in which case the choice of file extension is chosen
+# according to the choices made in fileExtensionPreference
+# Other file extensions can be added.
+fileExtensionPreference:
+    .tex: 1
+    .sty: 2
+    .cls: 3
+    .bib: 4
+
+# preferences for information displayed in the log file
+logFilePreferences:
+    showEveryYamlRead: 1
+    showAlmagamatedSettings: 0
+    endLogFileWith: '--------------' 
+    traceModeIncreaseIndent: '>>'
+    traceModeAddCurrentIndent: '||'
+    traceModeDecreaseIndent: '<<'
+    traceModeBetweenLines: "\n"
+
+# \begin{document} and \end{document} are treated differently
+# by latexindent within filecontents environments
+fileContentsEnvironments:
+    filecontents: 1
+    filecontents*: 1
+
     
 # *** NOTE ***
 # If you have specified alwaysLookforSplitBraces: 1

Modified: trunk/Master/texmf-dist/scripts/latexindent/latexindent.pl
===================================================================
(Binary files differ)



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